Variant report

Variant	rs71608491
Chromosome Location	chr4:143522895-143522896
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143520541..143523136-chr4:143767058..143768735,2	MCF-7	breast:
2	chr4:143521789..143524900-chr4:143525701..143529470,4	MCF-7	breast:
3	chr4:143326852..143329330-chr4:143520781..143523143,2	MCF-7	breast:
4	chr4:143388165..143401257-chr4:143512284..143528837,40	MCF-7	breast:
5	chr4:143518531..143520300-chr4:143521688..143524164,2	MCF-7	breast:
6	chr4:143391752..143397700-chr4:143513549..143524281,24	MCF-7	breast:
7	chr4:143515194..143518460-chr4:143519756..143524261,5	MCF-7	breast:
8	chr4:143522544..143524167-chr4:143536541..143538148,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13110257	0.92[AFR][1000 genomes]
rs13122722	0.83[AMR][1000 genomes]
rs35011079	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282189	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35557770	0.83[AMR][1000 genomes]
rs62331864	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143516000-143523800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143517000-143530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:143518400-143524200	Weak transcription	Aorta	Aorta
5	chr4:143519600-143525000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:143520000-143536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:143520600-143523800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:143520800-143524000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links