Variant report

Variant	rs7160919
Chromosome Location	chr14:37518258-37518259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11156933	0.87[EUR][1000 genomes]
rs13329062	0.96[EUR][1000 genomes]
rs13329063	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17106029	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17106078	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106088	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106194	0.83[YRI][hapmap]
rs58096842	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58496598	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7140385	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140991	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7141171	0.96[EUR][1000 genomes]
rs7161715	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73258226	0.80[EUR][1000 genomes]
rs74045265	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74045478	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37515600-37518400	Weak transcription	Pancreas	Pancrea
2	chr14:37516000-37518800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:37516200-37518800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:37516400-37518600	Enhancers	HMEC	breast
5	chr14:37516600-37518600	Enhancers	NH-A	brain
6	chr14:37516800-37518400	Enhancers	Hela-S3	cervix
7	chr14:37517200-37518400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:37517400-37518800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:37517600-37518600	Enhancers	HUVEC	blood vessel
10	chr14:37517800-37518400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:37518000-37518400	Enhancers	A549	lung
12	chr14:37518000-37518600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:37518200-37518800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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