Variant report

Variant	rs71610408
Chromosome Location	chr4:143946433-143946434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143804340..143805239-chr4:143946331..143947512,3	MCF-7	breast:
2	chr4:143945765..143946547-chr4:144099211..144100178,2	MCF-7	breast:
3	chr4:143274011..143274935-chr4:143946210..143946920,2	MCF-7	breast:
4	chr4:143803402..143804305-chr4:143946373..143947084,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10000831	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461277	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461278	0.83[ASN][1000 genomes]
rs10461279	0.83[ASN][1000 genomes]
rs11933189	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11935914	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941742	0.83[ASN][1000 genomes]
rs11945672	0.83[ASN][1000 genomes]
rs12711407	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13105227	0.83[ASN][1000 genomes]
rs13105258	0.83[ASN][1000 genomes]
rs13113118	0.83[ASN][1000 genomes]
rs13113907	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130995	0.83[ASN][1000 genomes]
rs13131510	0.83[ASN][1000 genomes]
rs13140326	0.83[ASN][1000 genomes]
rs13141368	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13141417	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145081	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17017424	0.83[ASN][1000 genomes]
rs2102494	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28452225	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28654139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28797214	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28891127	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300932	0.83[ASN][1000 genomes]
rs300933	0.83[ASN][1000 genomes]
rs300937	0.83[ASN][1000 genomes]
rs300942	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34176541	0.83[ASN][1000 genomes]
rs34198661	0.83[ASN][1000 genomes]
rs34225955	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34376112	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34461753	0.83[ASN][1000 genomes]
rs34474130	0.83[ASN][1000 genomes]
rs34589296	0.83[ASN][1000 genomes]
rs34652171	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34770317	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35021023	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35095943	0.83[ASN][1000 genomes]
rs35143494	0.83[ASN][1000 genomes]
rs35305979	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35311425	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35416586	0.83[EUR][1000 genomes]
rs35549285	0.83[ASN][1000 genomes]
rs35607189	0.83[ASN][1000 genomes]
rs35909303	0.83[ASN][1000 genomes]
rs35971728	0.83[ASN][1000 genomes]
rs35988039	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4554015	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4690751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690772	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55846476	0.83[ASN][1000 genomes]
rs56085707	0.83[ASN][1000 genomes]
rs603861	0.83[ASN][1000 genomes]
rs603934	0.83[ASN][1000 genomes]
rs604746	0.83[ASN][1000 genomes]
rs6537143	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834491	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6842633	0.83[ASN][1000 genomes]
rs6853356	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6857448	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610420	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610422	0.83[ASN][1000 genomes]
rs71610423	0.83[ASN][1000 genomes]
rs71610426	0.83[ASN][1000 genomes]
rs71610427	0.83[ASN][1000 genomes]
rs71610428	0.83[ASN][1000 genomes]
rs71610429	0.83[ASN][1000 genomes]
rs7655033	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7661883	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670050	1.00[ASN][1000 genomes]
rs7670426	0.83[ASN][1000 genomes]
rs7674403	0.83[ASN][1000 genomes]
rs7686023	0.83[ASN][1000 genomes]
rs9637656	0.83[ASN][1000 genomes]
rs9994551	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997167	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033285	chr4:143884298-144010784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv537288	chr4:143884298-144010784	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv880176	chr4:143929235-144027729	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143932800-143948000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:143941200-143947800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:143942600-143946800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:143945200-143946800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:143945400-143946600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:143945600-143946800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr4:143946000-143946600	Enhancers	Osteobl	bone
8	chr4:143946200-143946600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:143946200-143946600	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:143946200-143946600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:143946200-143946600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:143946200-143946800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:143946200-143947000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:143946200-143947000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:143946200-143947000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:143946200-143948200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:143946400-143946600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:143946400-143946600	Enhancers	A549	lung
19	chr4:143946400-143947400	Weak transcription	Esophagus	oesophagus

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