Variant report

Variant	rs71610420
Chromosome Location	chr4:144098007-144098008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144095297..144098387-chr4:144099497..144101621,3	K562	blood:
2	chr4:144094488..144096347-chr4:144097558..144099799,2	MCF-7	breast:
3	chr4:144097632..144100822-chr4:144104140..144107231,5	MCF-7	breast:
4	chr4:144096235..144099412-chr4:144099530..144102386,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP38-4	chr4:144097492-144098168	NONHSAT098548

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10000831	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461277	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461278	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461279	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519679	0.91[EUR][1000 genomes]
rs1108827	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11933189	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935914	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941742	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945672	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12711407	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104755	0.82[AMR][1000 genomes]
rs13105227	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105258	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111543	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13113118	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113907	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13118809	0.82[AMR][1000 genomes]
rs13127055	0.82[AMR][1000 genomes]
rs13130995	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131510	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137712	0.88[AMR][1000 genomes]
rs13140326	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141368	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141417	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13145081	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017424	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102494	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28452225	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654139	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28797214	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28891127	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300907	0.85[EUR][1000 genomes]
rs300932	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300933	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300937	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300942	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300944	0.86[EUR][1000 genomes]
rs300945	0.86[EUR][1000 genomes]
rs300950	0.86[EUR][1000 genomes]
rs34176541	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34192902	0.82[AMR][1000 genomes]
rs34198661	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225955	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376112	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34398038	0.88[AMR][1000 genomes]
rs34461753	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474130	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589296	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652171	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770317	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780033	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35021023	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35027946	0.88[AMR][1000 genomes]
rs35095943	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35143494	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305979	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311425	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416586	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549285	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607189	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887480	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35909303	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971728	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988039	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4554015	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690751	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4690772	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693016	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55846476	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085707	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142323	0.90[EUR][1000 genomes]
rs603861	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603934	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604746	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537143	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6834491	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842633	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853356	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857448	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs686770	0.81[EUR][1000 genomes]
rs71610408	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610422	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610423	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610426	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610427	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610428	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610429	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610431	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71610432	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71610438	0.82[AMR][1000 genomes]
rs71610440	0.82[AMR][1000 genomes]
rs71610442	0.82[AMR][1000 genomes]
rs726022	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7655033	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661883	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670050	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670426	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674403	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686023	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994551	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997167	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144088400-144099000	Weak transcription	Aorta	Aorta
2	chr4:144095000-144099000	Weak transcription	Left Ventricle	heart
3	chr4:144096600-144104800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:144096800-144104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:144097600-144098200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:144097600-144098200	ZNF genes & repeats	Fetal Heart	heart
7	chr4:144097600-144099600	ZNF genes & repeats	Fetal Muscle Leg	muscle
8	chr4:144097600-144100400	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr4:144097600-144100600	ZNF genes & repeats	Fetal Lung	lung
10	chr4:144097600-144102200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr4:144097600-144103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:144097800-144098200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:144097800-144098400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:144097800-144104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:144097800-144104800	Weak transcription	Psoas Muscle	Psoas
16	chr4:144098000-144102000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:144098000-144104400	Weak transcription	Brain Hippocampus Middle	brain

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