Variant report

Variant	rs71614604
Chromosome Location	chr4:100563681-100563682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100560411..100562122-chr4:100562728..100564350,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11097666	0.83[AMR][1000 genomes]
rs13121590	0.81[EUR][1000 genomes]
rs13135675	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13135826	0.83[AMR][1000 genomes]
rs13142452	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13151234	0.83[AMR][1000 genomes]
rs17029189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17029211	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17029213	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17029215	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34135026	0.83[AMR][1000 genomes]
rs34246356	0.83[AMR][1000 genomes]
rs34678000	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34734558	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34756677	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35074439	0.83[AMR][1000 genomes]
rs35391161	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35561084	0.87[EUR][1000 genomes]
rs35595171	0.87[EUR][1000 genomes]
rs35824615	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35992230	0.83[AMR][1000 genomes]
rs41275719	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6532821	0.83[AMR][1000 genomes]
rs71612697	0.83[AMR][1000 genomes]
rs71612700	0.83[AMR][1000 genomes]
rs71612702	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71614603	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71619723	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7665414	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7667001	0.83[AMR][1000 genomes]
rs7688278	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100553600-100564200	Weak transcription	Left Ventricle	heart
2	chr4:100553600-100564600	Weak transcription	Psoas Muscle	Psoas
3	chr4:100556400-100563800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:100561800-100567400	Weak transcription	HSMMtube	muscle
5	chr4:100562400-100563800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:100562400-100563800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:100562400-100565000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:100563000-100563800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:100563200-100564800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr4:100563400-100564400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:100563400-100564800	Enhancers	Fetal Heart	heart
12	chr4:100563400-100565000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:100563400-100565200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr4:100563400-100565800	Enhancers	Adipose Nuclei	Adipose
15	chr4:100563400-100567000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:100563400-100567600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:100563600-100564200	Enhancers	Liver	Liver
18	chr4:100563600-100564600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:100563600-100565000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr4:100563600-100565400	Enhancers	Fetal Lung	lung

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