Variant report
| Variant | rs71627997 |
|---|---|
| Chromosome Location | chr5:59534096-59534097 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11745887 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12186826 | 0.84[EUR][1000 genomes] |
| rs12187669 | 0.84[EUR][1000 genomes] |
| rs12188020 | 0.84[EUR][1000 genomes] |
| rs13157125 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13186687 | 1.00[ASN][1000 genomes] |
| rs17385322 | 0.81[EUR][1000 genomes] |
| rs2113071 | 0.80[EUR][1000 genomes] |
| rs34072532 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34886118 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35381370 | 0.84[EUR][1000 genomes] |
| rs4270654 | 0.84[EUR][1000 genomes] |
| rs4513649 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4577666 | 0.84[EUR][1000 genomes] |
| rs6868695 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6868850 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6879253 | 1.00[ASN][1000 genomes] |
| rs6882049 | 1.00[ASN][1000 genomes] |
| rs6889641 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71627994 | 0.83[EUR][1000 genomes] |
| rs71627995 | 0.84[EUR][1000 genomes] |
| rs71627996 | 0.84[EUR][1000 genomes] |
| rs71627998 | 0.84[EUR][1000 genomes] |
| rs73106785 | 1.00[ASN][1000 genomes] |
| rs7709269 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025856 | chr5:59188419-59928852 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv830316 | chr5:59480269-59689829 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv4847 | chr5:59523591-59569307 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:59529400-59536000 | Weak transcription | Primary B cells from cord blood | blood |
| 2 | chr5:59529800-59536000 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
