Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10939838	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10939839	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11743928	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11745887	0.83[EUR][1000 genomes]
rs12186826	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12187669	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188020	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13157125	0.86[EUR][1000 genomes]
rs17385322	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17450732	0.83[EUR][1000 genomes]
rs2113071	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35381370	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35415111	0.84[EUR][1000 genomes]
rs4270654	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4513649	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4577666	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6868695	0.86[EUR][1000 genomes]
rs6868850	0.86[EUR][1000 genomes]
rs6889641	0.86[EUR][1000 genomes]
rs71627994	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71627995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627996	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627997	0.84[EUR][1000 genomes]
rs7709269	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4847	chr5:59523591-59569307	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59539400-59544000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:59542200-59544800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:59542600-59546200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:59543400-59544000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:59543600-59546400	Enhancers	Primary B cells from cord blood	blood
6	chr5:59543800-59545600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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