The 2.0 version of rSNPBase

Variant report

Variant rs71628697
Chromosome Location chr1:155882562-155882563
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:155881200-155883000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:155881200-155883600 Weak transcription Lung lung
3 chr1:155881200-155883600 Weak transcription Small Intestine intestine
4 chr1:155881200-155883600 Weak transcription Spleen Spleen
5 chr1:155881200-155883800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:155881200-155885400 Weak transcription Gastric stomach
7 chr1:155881400-155883600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr1:155881400-155885000 Weak transcription Esophagus oesophagus
9 chr1:155881400-155889600 Weak transcription Pancreas Pancrea
10 chr1:155881400-155890400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:155881600-155882600 Weak transcription Duodenum Mucosa Duodenum
12 chr1:155881600-155882800 Weak transcription H1 Cell Line embryonic stem cell
13 chr1:155881600-155882800 Weak transcription H9 Cell Line embryonic stem cell
14 chr1:155881600-155882800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:155881600-155882800 Genic enhancers Muscle Satellite Cultured Cells --
16 chr1:155881600-155882800 Weak transcription Fetal Brain Female brain
17 chr1:155881600-155882800 Weak transcription Fetal Kidney kidney
18 chr1:155881600-155882800 Genic enhancers GM12878-XiMat blood
19 chr1:155881600-155883000 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr1:155881600-155883000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:155881600-155883200 Weak transcription Brain Substantia Nigra brain
22 chr1:155881600-155883200 Weak transcription Fetal Brain Male brain
23 chr1:155881600-155883400 Weak transcription Brain Angular Gyrus brain
24 chr1:155881600-155883400 Weak transcription Brain Hippocampus Middle brain
25 chr1:155881600-155883400 Weak transcription Psoas Muscle Psoas
26 chr1:155881600-155883800 Weak transcription Aorta Aorta
27 chr1:155881600-155883800 Weak transcription Brain Germinal Matrix brain
28 chr1:155881600-155885000 Weak transcription Ovary ovary
29 chr1:155881600-155885400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:155881600-155885400 Weak transcription Right Ventricle heart
31 chr1:155881600-155886200 Weak transcription ES-WA7 Cell Line embryonic stem cell
32 chr1:155881600-155889800 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr1:155881600-155890800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:155881800-155882600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:155881800-155882600 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr1:155881800-155882600 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr1:155881800-155882600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr1:155881800-155882600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:155881800-155882600 Strong transcription Fetal Intestine Small intestine
40 chr1:155881800-155882600 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr1:155881800-155882800 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:155881800-155883000 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr1:155881800-155883000 Weak transcription Primary T cells from cord blood blood
44 chr1:155881800-155883000 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr1:155881800-155883000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr1:155881800-155883000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr1:155881800-155883000 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr1:155881800-155883000 Weak transcription Brain Anterior Caudate brain
49 chr1:155881800-155883000 Weak transcription Brain Cingulate Gyrus brain
50 chr1:155881800-155883000 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015