Variant report

Variant	rs71631925
Chromosome Location	chr5:61399309-61399310
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11739501	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746415	1.00[ASN][1000 genomes]
rs11748847	1.00[ASN][1000 genomes]
rs11750109	0.81[ASN][1000 genomes]
rs13157939	1.00[ASN][1000 genomes]
rs13162821	0.81[ASN][1000 genomes]
rs13178877	1.00[ASN][1000 genomes]
rs13186643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898781	1.00[ASN][1000 genomes]
rs16898838	0.81[ASN][1000 genomes]
rs35692500	0.86[ASN][1000 genomes]
rs3846461	1.00[ASN][1000 genomes]
rs3846465	0.98[ASN][1000 genomes]
rs4635894	0.98[ASN][1000 genomes]
rs71617421	0.86[ASN][1000 genomes]
rs71631923	0.89[EUR][1000 genomes]
rs71631932	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv830317	chr5:61298840-61478113	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61398200-61409600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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