Variant report

Variant	rs71643204
Chromosome Location	chr1:79019185-79019186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11162508	1.00[ASN][1000 genomes]
rs12060353	1.00[ASN][1000 genomes]
rs12065196	1.00[ASN][1000 genomes]
rs12069538	1.00[ASN][1000 genomes]
rs12074883	1.00[ASN][1000 genomes]
rs12723149	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12731181	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737007	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743477	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750516	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751216	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17393482	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397597	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2146490	0.82[EUR][1000 genomes]
rs34427371	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34491075	1.00[ASN][1000 genomes]
rs34635429	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727624	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35153996	0.94[EUR][1000 genomes]
rs35223399	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337590	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35735651	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35886379	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35922757	1.00[ASN][1000 genomes]
rs36037890	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36088152	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41309153	0.94[EUR][1000 genomes]
rs41313355	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67458600	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71641401	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71643205	0.93[EUR][1000 genomes]
rs7539356	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539847	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv3375099	chr1:79010980-79033337	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1577	chr1:79013311-79058575	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79018800-79019600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links