Variant report

Variant	rs7164902
Chromosome Location	chr15:34551082-34551083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34542779..34546131-chr15:34549180..34553108,3	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs104017	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs1045204	0.92[CHD][hapmap]
rs11631094	0.94[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap]
rs12591967	0.88[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12592443	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12594569	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12595504	0.92[CHD][hapmap]
rs168335	0.94[EUR][1000 genomes]
rs16958910	0.84[ASN][1000 genomes]
rs16958954	0.88[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs16958989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958995	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs16959012	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs16959021	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs180886	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs2085966	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2126420	0.87[ASN][1000 genomes]
rs2126421	0.84[ASN][1000 genomes]
rs2644243	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2644245	0.88[EUR][1000 genomes]
rs2644247	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2644248	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2705343	0.83[CHD][hapmap]
rs2705348	0.88[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs347804	0.84[EUR][1000 genomes]
rs347805	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs347806	0.87[EUR][1000 genomes]
rs347807	0.87[EUR][1000 genomes]
rs347809	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs347810	0.89[ASN][1000 genomes]
rs347812	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs347813	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs347817	0.87[EUR][1000 genomes]
rs347818	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.90[ASN][1000 genomes]
rs347819	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs347822	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs347823	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs347824	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs347827	0.82[CHB][hapmap]
rs347830	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs347834	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs347836	0.82[CHB][hapmap]
rs347842	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs347843	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs347845	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs347846	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs347847	0.83[EUR][1000 genomes]
rs347848	0.88[CHB][hapmap]
rs347849	0.95[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs347851	0.90[CEU][hapmap];0.88[CHB][hapmap];0.83[EUR][1000 genomes]
rs347856	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs347858	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs347860	0.89[ASN][1000 genomes]
rs347861	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.88[ASN][1000 genomes]
rs347866	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs347867	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs405080	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs419179	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs426634	0.90[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs436552	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.89[ASN][1000 genomes]
rs4387570	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs440025	0.88[EUR][1000 genomes]
rs442006	0.89[ASN][1000 genomes]
rs449053	0.88[EUR][1000 genomes]
rs56207527	0.90[ASN][1000 genomes]
rs56388838	0.89[ASN][1000 genomes]
rs57875866	0.83[ASN][1000 genomes]
rs60114685	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60539207	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6495660	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs6495662	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs7163919	0.83[ASN][1000 genomes]
rs7175028	0.88[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap]
rs7176426	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs7181260	0.87[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs7183269	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73390084	0.83[ASN][1000 genomes]
rs73392004	0.83[ASN][1000 genomes]
rs7495538	0.83[ASN][1000 genomes]
rs756086	0.82[CHB][hapmap]
rs8023583	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs8025057	0.82[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap]
rs8028600	0.80[JPT][hapmap]
rs8031145	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs8031147	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs8031404	0.92[CHD][hapmap]
rs8032347	0.92[CHD][hapmap]
rs8038177	0.81[CHB][hapmap]
rs8041425	0.86[EUR][1000 genomes]
rs924065	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs9630418	0.82[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7164902	FAN1	cis	parietal	SCAN
rs7164902	NOP10	cis	Thyroid	GTEx

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34518000-34571800	Weak transcription	Stomach Mucosa	stomach
2	chr15:34519000-34552400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:34519200-34552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:34519200-34553600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:34519400-34552200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr15:34519400-34552200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:34519600-34553600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:34520200-34555600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr15:34524200-34552400	Strong transcription	Primary B cells from cord blood	blood
10	chr15:34524800-34553600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr15:34528600-34554600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:34529000-34554800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:34529200-34552200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:34533000-34555600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:34533000-34556600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:34533000-34564000	Weak transcription	NHLF	lung
17	chr15:34533200-34551200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:34533200-34557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:34533200-34562800	Weak transcription	Pancreas	Pancrea
20	chr15:34535200-34552200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:34535400-34551200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:34535600-34551200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:34539400-34552200	Weak transcription	HMEC	breast
24	chr15:34540000-34551200	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:34540200-34552200	Strong transcription	Adipose Nuclei	Adipose
26	chr15:34540800-34551200	Strong transcription	Liver	Liver
27	chr15:34541000-34551400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:34541400-34552200	Strong transcription	GM12878-XiMat	blood
29	chr15:34543000-34551800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:34543000-34568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:34543200-34558800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:34544600-34552000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:34544600-34554400	Weak transcription	NHDF-Ad	bronchial
34	chr15:34544600-34559000	Weak transcription	A549	lung
35	chr15:34545000-34551600	Weak transcription	HSMM	muscle
36	chr15:34545200-34551200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:34545200-34552200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:34545200-34553600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:34545400-34552000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:34545400-34555400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:34545800-34553600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:34546400-34551600	Weak transcription	K562	blood
43	chr15:34546600-34555800	Weak transcription	Hela-S3	cervix
44	chr15:34546600-34556400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:34546800-34552400	Weak transcription	Colonic Mucosa	Colon
46	chr15:34546800-34552400	Weak transcription	Small Intestine	intestine
47	chr15:34546800-34553400	Weak transcription	Psoas Muscle	Psoas
48	chr15:34546800-34554400	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:34546800-34554800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr15:34546800-34554800	Weak transcription	Gastric	stomach

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