Variant report

Variant	rs7166043
Chromosome Location	chr15:34623817-34623818
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34616765..34618642-chr15:34621899..34624086,2	K562	blood:
2	chr15:34623463..34625220-chr15:34629073..34631076,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140199	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs104017	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1045238	0.82[ASN][1000 genomes]
rs11631094	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12593384	0.82[ASN][1000 genomes]
rs12594569	0.83[ASN][1000 genomes]
rs16958989	0.86[ASN][1000 genomes]
rs16958995	0.82[ASN][1000 genomes]
rs16959012	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16959014	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16959020	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16959021	0.86[ASN][1000 genomes]
rs180886	0.86[ASN][1000 genomes]
rs1845773	0.82[ASN][1000 genomes]
rs186987	0.86[ASN][1000 genomes]
rs2219668	0.82[ASN][1000 genomes]
rs2615357	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2644243	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539755	0.83[ASN][1000 genomes]
rs3063	0.82[ASN][1000 genomes]
rs34639726	0.82[ASN][1000 genomes]
rs347809	0.80[ASN][1000 genomes]
rs347810	0.86[ASN][1000 genomes]
rs347812	0.83[ASN][1000 genomes]
rs347813	0.82[ASN][1000 genomes]
rs347818	0.86[ASN][1000 genomes]
rs347819	0.82[ASN][1000 genomes]
rs347822	0.82[ASN][1000 genomes]
rs347824	0.82[ASN][1000 genomes]
rs347827	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs347830	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs347831	0.86[ASN][1000 genomes]
rs347832	0.86[ASN][1000 genomes]
rs347833	0.86[ASN][1000 genomes]
rs347834	0.86[ASN][1000 genomes]
rs347835	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347836	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs347837	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs347838	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs347845	0.84[ASN][1000 genomes]
rs347846	0.80[ASN][1000 genomes]
rs347856	0.84[ASN][1000 genomes]
rs347860	0.86[ASN][1000 genomes]
rs347861	0.88[ASN][1000 genomes]
rs347866	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs347867	0.86[ASN][1000 genomes]
rs380248	0.83[ASN][1000 genomes]
rs419179	0.83[ASN][1000 genomes]
rs422388	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs436552	0.86[ASN][1000 genomes]
rs4387570	0.83[ASN][1000 genomes]
rs442006	0.86[ASN][1000 genomes]
rs4569235	0.82[ASN][1000 genomes]
rs55745608	0.85[ASN][1000 genomes]
rs56057955	0.82[ASN][1000 genomes]
rs56762274	0.82[ASN][1000 genomes]
rs58343025	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs59452641	0.86[ASN][1000 genomes]
rs59861881	0.82[ASN][1000 genomes]
rs60156693	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6495660	0.81[ASN][1000 genomes]
rs6495661	0.82[ASN][1000 genomes]
rs6495662	0.82[ASN][1000 genomes]
rs7163195	0.86[ASN][1000 genomes]
rs7166066	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7175028	0.83[ASN][1000 genomes]
rs7176009	0.83[ASN][1000 genomes]
rs7176426	0.83[ASN][1000 genomes]
rs7182584	0.82[ASN][1000 genomes]
rs72486679	0.82[ASN][1000 genomes]
rs73374455	0.86[ASN][1000 genomes]
rs73374473	0.86[ASN][1000 genomes]
rs73374475	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73374477	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73374490	0.85[ASN][1000 genomes]
rs73374491	0.85[ASN][1000 genomes]
rs73374493	0.85[ASN][1000 genomes]
rs73374500	0.82[ASN][1000 genomes]
rs73374502	0.82[ASN][1000 genomes]
rs756086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8023583	0.86[ASN][1000 genomes]
rs8031145	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs8031147	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs8031958	0.86[ASN][1000 genomes]
rs8033032	0.81[ASN][1000 genomes]
rs8037379	0.85[ASN][1000 genomes]
rs8038177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8042163	0.86[ASN][1000 genomes]
rs924065	0.86[ASN][1000 genomes]
rs9630418	0.85[ASN][1000 genomes]
rs9972305	0.86[ASN][1000 genomes]
rs9972323	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34611000-34628600	Weak transcription	Lung	lung
2	chr15:34611200-34629200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:34611400-34626000	Weak transcription	HUVEC	blood vessel
4	chr15:34611400-34626400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:34611400-34626400	Weak transcription	Brain Angular Gyrus	brain
6	chr15:34614600-34628600	Weak transcription	Psoas Muscle	Psoas
7	chr15:34616200-34628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:34617200-34626400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr15:34618200-34624000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:34618400-34626400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:34618400-34627800	Weak transcription	Left Ventricle	heart
12	chr15:34619200-34624000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:34619800-34625800	Enhancers	Primary hematopoietic stem cells	blood
14	chr15:34619800-34628600	Weak transcription	Pancreas	Pancrea
15	chr15:34620400-34625600	Enhancers	Primary B cells from peripheral blood	blood
16	chr15:34620600-34626400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:34620600-34626400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:34620800-34625000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr15:34620800-34626400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr15:34620800-34626800	Weak transcription	Brain Anterior Caudate	brain
21	chr15:34621000-34624200	Weak transcription	Thymus	Thymus
22	chr15:34621000-34628200	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:34621400-34625600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr15:34621400-34625800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr15:34621600-34624000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr15:34621600-34624000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:34621600-34626400	Weak transcription	Aorta	Aorta
28	chr15:34621600-34626400	Weak transcription	Brain Substantia Nigra	brain
29	chr15:34621600-34626800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:34621600-34627000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:34621800-34624000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:34621800-34626400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:34621800-34628000	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:34622200-34628600	Weak transcription	Placenta	Placenta
35	chr15:34622600-34626600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:34622600-34627000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:34622600-34627000	Weak transcription	NHLF	lung
38	chr15:34622800-34624000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr15:34622800-34627000	Weak transcription	NHDF-Ad	bronchial
40	chr15:34623200-34626200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:34623400-34624000	Enhancers	Primary T cells from cord blood	blood
42	chr15:34623400-34624000	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:34623400-34624600	Weak transcription	Fetal Brain Female	brain
44	chr15:34623400-34625000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr15:34623600-34624000	Weak transcription	Primary B cells from cord blood	blood
46	chr15:34623600-34624600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:34623600-34624600	Weak transcription	Fetal Thymus	thymus
48	chr15:34623600-34624800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
49	chr15:34623600-34625200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:34623600-34629800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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