Variant report

Variant	rs7166360
Chromosome Location	chr15:34442291-34442292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34440103..34442348-chr15:34444785..34446389,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11072998	0.81[ASN][1000 genomes]
rs12594077	0.85[ASN][1000 genomes]
rs16958829	0.82[ASN][1000 genomes]
rs16958835	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339368	0.82[ASN][1000 genomes]
rs2339369	0.81[ASN][1000 genomes]
rs56936283	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57699120	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57715967	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59611916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495558	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7172480	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7175168	0.82[ASN][1000 genomes]
rs73376156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73376164	0.85[ASN][1000 genomes]
rs73376168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376178	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73376181	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73376192	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73376193	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73376196	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73378126	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73378144	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73380107	0.82[ASN][1000 genomes]
rs8025730	0.83[ASN][1000 genomes]
rs8031102	0.83[ASN][1000 genomes]
rs8036791	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8040732	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7166360	NOP10	cis	Esophagus Muscularis	GTEx
rs7166360	NOP10	cis	Heart Left Ventricle	GTEx
rs7166360	NOP10	cis	Esophagus Mucosa	GTEx
rs7166360	NOP10	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:34427800-34446400	Weak transcription	Psoas Muscle	Psoas
3	chr15:34428800-34442400	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:34429000-34442400	Weak transcription	Aorta	Aorta
5	chr15:34429000-34444400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:34429200-34446200	Strong transcription	Placenta	Placenta
7	chr15:34429400-34445400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:34429400-34445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:34429400-34445800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:34429600-34444800	Strong transcription	Adipose Nuclei	Adipose
11	chr15:34429600-34446400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr15:34429800-34446400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:34430200-34443000	Weak transcription	Fetal Brain Male	brain
15	chr15:34430200-34443800	Weak transcription	GM12878-XiMat	blood
16	chr15:34430200-34445600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:34430200-34446000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:34430400-34443000	Weak transcription	Fetal Heart	heart
19	chr15:34430600-34446600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:34431000-34446200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:34431000-34446400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:34431200-34445600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:34431200-34446400	Weak transcription	K562	blood
24	chr15:34431200-34453200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:34431400-34446000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:34431400-34446800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:34431600-34442600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:34432000-34446400	Weak transcription	Brain Substantia Nigra	brain
29	chr15:34432800-34446400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:34433000-34446600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr15:34433000-34446800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr15:34433200-34442800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:34433200-34448200	Weak transcription	Gastric	stomach
34	chr15:34433400-34443400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:34433400-34446400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:34433400-34453200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:34434000-34453000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:34434200-34446200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:34434200-34446400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:34434400-34446400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:34434400-34450200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr15:34434600-34446600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:34434800-34444800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:34435000-34442400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr15:34435000-34446400	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr15:34435400-34445800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:34435800-34442600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:34435800-34453000	Weak transcription	Stomach Mucosa	stomach
49	chr15:34437000-34445000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:34437200-34442400	Weak transcription	Brain Anterior Caudate	brain

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