Variant report

Variant	rs7167004
Chromosome Location	chr15:76547947-76547948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1047357	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs11854285	0.85[CEU][hapmap]
rs11854972	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11856244	0.87[EUR][1000 genomes]
rs11856470	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11857880	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12437866	0.86[YRI][hapmap]
rs12441111	0.86[YRI][hapmap]
rs2469208	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs55831300	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55923544	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56220133	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56233972	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56313024	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59691037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60060261	0.82[AFR][1000 genomes]
rs60261704	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62027004	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62027007	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62027010	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62027014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62027016	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62027019	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62027054	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62030162	0.84[EUR][1000 genomes]
rs62030163	0.82[EUR][1000 genomes]
rs62030169	0.87[EUR][1000 genomes]
rs62030170	0.87[EUR][1000 genomes]
rs62030172	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62030183	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62030184	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62030186	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62030187	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62030191	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62030230	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62030234	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62030240	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6495195	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7166675	0.98[AFR][1000 genomes]
rs7171795	0.86[YRI][hapmap]
rs7175022	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7175442	0.94[AFR][1000 genomes]
rs72736846	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736862	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72736888	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72736892	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8033926	0.93[YRI][hapmap];0.97[AFR][1000 genomes]
rs8038885	0.85[YRI][hapmap]
rs8042654	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv527608	chr15:76530267-76562738	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76503600-76551400	Weak transcription	Small Intestine	intestine
2	chr15:76507200-76551400	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
4	chr15:76510400-76555000	Weak transcription	NH-A	brain
5	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:76513800-76551400	Weak transcription	Stomach Mucosa	stomach
7	chr15:76516400-76550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:76517200-76551800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:76517400-76549200	Weak transcription	Fetal Kidney	kidney
10	chr15:76517400-76550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:76517400-76550600	Weak transcription	Pancreas	Pancrea
12	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:76517600-76550600	Weak transcription	Aorta	Aorta
14	chr15:76517600-76550600	Weak transcription	Ovary	ovary
15	chr15:76517600-76551200	Weak transcription	Right Ventricle	heart
16	chr15:76517600-76551400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:76517600-76553800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:76518200-76550400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:76521400-76551600	Weak transcription	Left Ventricle	heart
20	chr15:76522400-76554400	Weak transcription	Fetal Heart	heart
21	chr15:76523600-76550600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:76523600-76550600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:76523600-76550600	Weak transcription	Colonic Mucosa	Colon
24	chr15:76523600-76550600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:76523800-76551200	Weak transcription	Fetal Thymus	thymus
26	chr15:76523800-76551800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:76524000-76551600	Weak transcription	HMEC	breast
28	chr15:76524200-76553000	Weak transcription	NHDF-Ad	bronchial
29	chr15:76525200-76550600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr15:76525200-76550600	Weak transcription	GM12878-XiMat	blood
31	chr15:76527600-76550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:76527600-76550600	Weak transcription	Esophagus	oesophagus
33	chr15:76529000-76550600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:76529000-76551000	Weak transcription	K562	blood
35	chr15:76530400-76550600	Weak transcription	Fetal Stomach	stomach
36	chr15:76531400-76551400	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:76532800-76551200	Weak transcription	HSMMtube	muscle
38	chr15:76533200-76550600	Weak transcription	HSMM	muscle
39	chr15:76535400-76549200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:76535400-76550600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:76535400-76550600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr15:76535400-76550800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr15:76535400-76553000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:76535600-76548000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:76535600-76550600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:76535600-76550600	Weak transcription	Adipose Nuclei	Adipose
47	chr15:76535600-76550600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:76535600-76550600	Weak transcription	Placenta	Placenta
49	chr15:76535600-76550600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr15:76535600-76550600	Weak transcription	Dnd41	blood

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