Variant report

Variant	rs7169825
Chromosome Location	chr15:76719137-76719138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12101929	0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16968349	1.00[AMR][1000 genomes]
rs28509286	1.00[AMR][1000 genomes]
rs28646074	1.00[AMR][1000 genomes]
rs28835608	0.80[LWK][hapmap]
rs28872583	1.00[AMR][1000 genomes]
rs55666147	1.00[AMR][1000 genomes]
rs56312206	1.00[AMR][1000 genomes]
rs7174835	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024123	1.00[AMR][1000 genomes]
rs74024162	1.00[AMR][1000 genomes]
rs8025581	1.00[AMR][1000 genomes]
rs8027086	1.00[AMR][1000 genomes]
rs8032219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042654	0.86[ASW][hapmap]
rs9783735	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
2	chr15:76673200-76727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:76693600-76720400	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:76695800-76726000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:76696600-76720600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:76697000-76719200	Weak transcription	Primary T cells from cord blood	blood
7	chr15:76697000-76720800	Weak transcription	Aorta	Aorta
8	chr15:76697000-76722200	Weak transcription	Spleen	Spleen
9	chr15:76697000-76723400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:76697000-76724000	Weak transcription	Brain Substantia Nigra	brain
11	chr15:76697000-76724400	Weak transcription	Pancreas	Pancrea
12	chr15:76697000-76726000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:76697000-76726400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:76697200-76720400	Weak transcription	Liver	Liver
15	chr15:76711200-76720800	Weak transcription	Left Ventricle	heart
16	chr15:76711600-76721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:76711600-76728400	Weak transcription	Placenta	Placenta
18	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:76713000-76720600	Weak transcription	Primary B cells from cord blood	blood
20	chr15:76716600-76725800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:76717000-76739000	Weak transcription	Gastric	stomach
22	chr15:76717400-76722200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:76717400-76724800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:76717600-76724200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:76717600-76726000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:76718000-76732800	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:76718200-76721200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:76718400-76719200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
29	chr15:76718400-76719200	ZNF genes & repeats	Fetal Intestine Large	intestine
30	chr15:76718600-76720200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:76718600-76727600	Weak transcription	Brain Germinal Matrix	brain
32	chr15:76718600-76730400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:76718800-76720200	Weak transcription	Fetal Intestine Small	intestine
34	chr15:76718800-76720200	Weak transcription	Thymus	Thymus
35	chr15:76718800-76721800	Weak transcription	Ovary	ovary
36	chr15:76718800-76724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:76718800-76724400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:76718800-76725600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:76718800-76732000	Weak transcription	Fetal Stomach	stomach
40	chr15:76718800-76736200	Weak transcription	Lung	lung
41	chr15:76719000-76720600	Weak transcription	Fetal Muscle Leg	muscle
42	chr15:76719000-76720800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:76719000-76722200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:76719000-76724400	Weak transcription	Fetal Thymus	thymus
45	chr15:76719000-76726600	Weak transcription	Primary T cells fromperipheralblood	blood

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