Variant report

Variant	rs717267
Chromosome Location	chr9:16408826-16408827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1057383	0.96[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810563	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1927619	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs1999032	0.81[CEU][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4961488	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4961717	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6475050	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6475052	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6475053	0.82[CEU][hapmap]
rs6475054	0.92[CEU][hapmap]
rs7026798	1.00[CEU][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7035049	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7039703	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7046026	0.96[CEU][hapmap]
rs7853747	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7856438	0.82[CEU][hapmap]
rs9298764	0.89[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs9406643	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400000-16411000	Weak transcription	NHLF	lung
2	chr9:16400600-16410200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
5	chr9:16407000-16412800	Weak transcription	Ovary	ovary
6	chr9:16407200-16410800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:16407200-16415800	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:16407200-16417000	Weak transcription	HSMM	muscle
9	chr9:16407400-16415800	Weak transcription	Fetal Kidney	kidney
10	chr9:16408800-16409000	Enhancers	Fetal Lung	lung
11	chr9:16408800-16409000	Enhancers	Osteobl	bone
12	chr9:16408800-16409200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:16408800-16410000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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