Variant report

Variant	rs7174377
Chromosome Location	chr15:76632043-76632044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:76631682-76632446	HL-60	blood:	n/a	n/a
2	POLR2A	chr15:76628957-76633759	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr15:76631377-76633541	H1-neurons	neurons:	n/a	n/a
4	SUZ12	chr15:76628987-76637136	NT2-D1	testis:	n/a	n/a
5	SPI1	chr15:76631355-76632136	HL-60	blood:	n/a	n/a
6	CTBP2	chr15:76631455-76635500	H1-hESC	embryonic stem cell:	n/a	n/a
7	SUZ12	chr15:76629195-76634787	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr15:76631898-76633726	GM18951	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76628671..76632944-chr15:76633969..76642252,10	MCF-7	breast:
3	chr15:76574110..76576498-chr15:76629872..76632197,2	K562	blood:
4	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
5	chr15:76627980..76632315-chr15:76633215..76636196,5	MCF-7	breast:
6	chr15:76630323..76632934-chr15:77355490..77357171,2	K562	blood:
7	chr15:76630618..76633246-chr15:76671829..76673785,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270036	TF binding region
ENSG00000270036	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000259514	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs4082688	1.00[AFR][1000 genomes]
rs57026560	1.00[AFR][1000 genomes]
rs57931886	1.00[AFR][1000 genomes]
rs58060544	0.87[AFR][1000 genomes]
rs58388611	0.87[AFR][1000 genomes]
rs60794367	1.00[AFR][1000 genomes]
rs7170187	1.00[AFR][1000 genomes]
rs7175175	1.00[AFR][1000 genomes]
rs73442144	0.87[AFR][1000 genomes]
rs73442152	0.87[AFR][1000 genomes]
rs73442155	0.87[AFR][1000 genomes]
rs73442176	0.87[AFR][1000 genomes]
rs73442185	0.87[AFR][1000 genomes]
rs73442188	0.87[AFR][1000 genomes]
rs73444261	0.87[AFR][1000 genomes]
rs73444264	0.87[AFR][1000 genomes]
rs73444270	1.00[AFR][1000 genomes]
rs73444271	1.00[AFR][1000 genomes]
rs73444275	1.00[AFR][1000 genomes]
rs73444284	0.87[AFR][1000 genomes]
rs73444286	0.87[AFR][1000 genomes]
rs73444294	0.87[AFR][1000 genomes]
rs73444302	0.87[AFR][1000 genomes]
rs73446211	0.87[AFR][1000 genomes]
rs73446219	0.87[AFR][1000 genomes]
rs73448115	1.00[AFR][1000 genomes]
rs73450219	1.00[AFR][1000 genomes]
rs73450231	1.00[AFR][1000 genomes]
rs73450235	0.87[AFR][1000 genomes]
rs73450238	0.87[AFR][1000 genomes]
rs73450253	1.00[AFR][1000 genomes]
rs73455126	0.87[AFR][1000 genomes]
rs73455146	0.87[AFR][1000 genomes]
rs73455153	0.87[AFR][1000 genomes]
rs73455162	0.87[AFR][1000 genomes]
rs8039673	0.87[AFR][1000 genomes]
rs8043089	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3398970	chr15:76629522-76632070	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76627400-76635400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:76627600-76632400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
3	chr15:76627600-76634400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
4	chr15:76629000-76633600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
5	chr15:76629200-76632200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:76629200-76632200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr15:76629200-76632600	Bivalent Enhancer	Fetal Thymus	thymus
8	chr15:76629400-76633400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
9	chr15:76629600-76632200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr15:76629800-76632800	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr15:76630000-76632200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
12	chr15:76630200-76632200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:76630200-76632200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
14	chr15:76630200-76641800	Weak transcription	A549	lung
15	chr15:76630400-76632600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
16	chr15:76630400-76636400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:76630600-76632200	Bivalent Enhancer	Brain Hippocampus Middle	brain
18	chr15:76630600-76632400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:76630600-76635600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:76630800-76632200	Enhancers	Pancreas	Pancrea
21	chr15:76630800-76632200	Weak transcription	HSMMtube	muscle
22	chr15:76630800-76632400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:76631000-76632200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:76631000-76632200	Enhancers	Right Ventricle	heart
25	chr15:76631000-76632600	Bivalent Enhancer	Liver	Liver
26	chr15:76631200-76632200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:76631200-76632200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:76631200-76632200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
29	chr15:76631200-76632200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr15:76631200-76632200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:76631200-76632200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:76631200-76632200	Enhancers	Gastric	stomach
33	chr15:76631200-76632600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:76631200-76633400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
35	chr15:76631400-76632200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
36	chr15:76631400-76632200	Bivalent Enhancer	Placenta	Placenta
37	chr15:76631400-76632200	Weak transcription	Right Atrium	heart
38	chr15:76631400-76632200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
39	chr15:76631400-76632600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:76631400-76633600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
41	chr15:76631600-76632200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
42	chr15:76631600-76632600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
43	chr15:76631600-76632600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
44	chr15:76631600-76633200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
45	chr15:76631600-76633600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
46	chr15:76631600-76634800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
47	chr15:76631600-76636400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:76631800-76632200	Transcr. at gene 5' and 3'	HepG2	liver
49	chr15:76631800-76632400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:76631800-76632800	Weak transcription	Hela-S3	cervix

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