Variant report

Variant	rs7175022
Chromosome Location	chr15:76515704-76515705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76510425..76512602-chr15:76513810..76515951,2	K562	blood:
2	chr15:76515308..76517340-chr15:76524371..76526709,2	MCF-7	breast:
3	chr15:76515156..76518708-chr15:76522074..76525565,3	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11854972	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856244	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11856470	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857880	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469208	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923544	0.90[EUR][1000 genomes]
rs56220133	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233972	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56313024	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59691037	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60261704	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027004	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027007	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027010	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027014	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027016	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027019	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027054	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027059	0.86[AMR][1000 genomes]
rs62028361	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs62030162	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62030163	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62030169	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62030170	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62030172	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030183	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030184	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030187	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030191	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62030234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030240	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495195	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495199	0.92[AFR][1000 genomes]
rs7167004	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7177769	0.85[AFR][1000 genomes]
rs72736846	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736888	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736892	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73448114	0.86[AMR][1000 genomes]
rs8042654	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:76492800-76517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:76492800-76526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:76493600-76526400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:76497000-76518200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:76499200-76516800	Weak transcription	Brain Angular Gyrus	brain
8	chr15:76499200-76527400	Weak transcription	Fetal Brain Male	brain
9	chr15:76500600-76534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:76501200-76524200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:76501800-76517200	Weak transcription	Fetal Kidney	kidney
12	chr15:76502400-76516200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:76503600-76551400	Weak transcription	Small Intestine	intestine
14	chr15:76504200-76517000	Weak transcription	Fetal Heart	heart
15	chr15:76505800-76518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:76506000-76526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:76506200-76526800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:76506400-76525600	Weak transcription	Fetal Brain Female	brain
19	chr15:76506800-76516800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:76507200-76516600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:76507200-76551400	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:76507400-76516800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:76507600-76516600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:76507600-76516600	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:76508000-76525000	Weak transcription	NHLF	lung
26	chr15:76508000-76525400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:76508200-76515800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:76508200-76521400	Weak transcription	NHDF-Ad	bronchial
29	chr15:76508400-76515800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:76508400-76516000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:76508400-76516800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:76508400-76546000	Weak transcription	Brain Anterior Caudate	brain
33	chr15:76508600-76515800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:76508600-76516400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:76508600-76517000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:76508600-76525200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:76509800-76516800	Weak transcription	HSMMtube	muscle
38	chr15:76510000-76516000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:76510000-76516600	Weak transcription	Colonic Mucosa	Colon
40	chr15:76510000-76516800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:76510000-76516800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:76510000-76523000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:76510000-76534600	Weak transcription	Brain Substantia Nigra	brain
44	chr15:76510200-76516600	Weak transcription	Osteobl	bone
45	chr15:76510200-76526000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
47	chr15:76510400-76515800	Weak transcription	Esophagus	oesophagus
48	chr15:76510400-76516000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:76510400-76516000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:76510400-76516000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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