Variant report

Variant	rs717910
Chromosome Location	chr1:94242255-94242256
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:94241890-94242650	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr1:94242187-94242648	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr1:94242201-94242863	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr1:94242130-94242363	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr1:94242220-94242557	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr1:94242103-94242701	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr1:94242239-94242537	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr1:94241422-94242679	MCF10A-Er-Src	breast:	n/a	chr1:94241634-94241645 chr1:94241531-94241539
9	STAT3	chr1:94242248-94242533	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr1:94242228-94242828	MCF10A-Er-Src	breast:	n/a	n/a
11	RAD21	chr1:94242199-94242399	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94242236..94243753-chr1:94263548..94266420,2	K562	blood:

Variant related genes	Relation type
ENSG00000230439	TF binding region

rs_ID	r²[population]
rs12410367	0.92[EUR][1000 genomes]
rs17100392	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17110458	0.92[EUR][1000 genomes]
rs61024563	0.92[EUR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
2	chr1:94235600-94245200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:94235600-94245200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:94235800-94245200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:94235800-94245200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:94236000-94244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:94236000-94245400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:94236000-94245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:94236200-94247400	Weak transcription	Fetal Intestine Small	intestine
10	chr1:94239400-94242800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:94239400-94245200	Weak transcription	Psoas Muscle	Psoas
12	chr1:94240600-94243000	Enhancers	A549	lung
13	chr1:94240800-94244600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:94240800-94245000	Weak transcription	Osteobl	bone
15	chr1:94241000-94242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:94241000-94242800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:94241000-94243000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:94241000-94243000	Enhancers	NHEK	skin
19	chr1:94241000-94243600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:94241000-94243600	Weak transcription	Placenta	Placenta
21	chr1:94241000-94244600	Weak transcription	NH-A	brain
22	chr1:94241000-94244800	Weak transcription	HSMM	muscle
23	chr1:94241000-94245200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:94241000-94245400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:94241000-94245400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:94241000-94247400	Enhancers	HMEC	breast
27	chr1:94241000-94249000	Enhancers	Hela-S3	cervix
28	chr1:94241200-94245000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:94241200-94245000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:94241200-94248400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:94241600-94242400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr1:94241600-94242800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:94241800-94244800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr1:94242200-94242600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:94242200-94242800	Enhancers	HepG2	liver

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