Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10043199	0.88[JPT][hapmap]
rs11950934	0.88[JPT][hapmap]
rs154197	0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs154205	0.84[ASN][1000 genomes]
rs17730306	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs294031	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs316511	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs316512	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs373773	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs382202	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs392711	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs444672	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs456470	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs457151	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs457260	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs467650	0.83[ASN][1000 genomes]
rs468238	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs469930	0.83[ASN][1000 genomes]
rs56264044	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61637015	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs977028	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs719246	RGMB	Cis_1M	lymphoblastoid	RTeQTL
rs719246	SLCO4C1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98056400-98059400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:98056400-98059400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:98056600-98059200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:98056600-98059400	Enhancers	HSMMtube	muscle
5	chr5:98056800-98058000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:98056800-98058400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:98056800-98059000	Enhancers	Osteobl	bone
8	chr5:98057000-98058200	Enhancers	NHLF	lung
9	chr5:98057000-98059000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:98057800-98058800	Enhancers	HSMM	muscle

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