Variant report

Variant	rs719311
Chromosome Location	chr7:147708637-147708638
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10224783	1.00[YRI][hapmap]
rs10227736	1.00[CEU][hapmap]
rs10227836	0.87[YRI][hapmap]
rs10229688	1.00[CEU][hapmap]
rs10243164	0.85[YRI][hapmap]
rs10253762	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs10256166	1.00[YRI][hapmap]
rs10261595	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10261693	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10264877	0.89[YRI][hapmap]
rs10264988	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10264997	0.85[YRI][hapmap]
rs10269138	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs10269250	0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs10269257	1.00[CEU][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs10270437	0.83[AFR][1000 genomes]
rs10270778	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs10273493	0.95[AFR][1000 genomes]
rs10276996	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10279557	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs10280388	0.80[YRI][hapmap]
rs10281326	1.00[CEU][hapmap]
rs10452891	1.00[CEU][hapmap]
rs10485853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10500194	1.00[CEU][hapmap]
rs11972972	0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs11974390	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs11976838	0.93[AFR][1000 genomes]
rs12530525	1.00[CEU][hapmap]
rs12532080	1.00[CEU][hapmap]
rs12532103	1.00[CEU][hapmap]
rs12532213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12536135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12536614	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs12539425	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12539685	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs12540014	1.00[CEU][hapmap]
rs12540049	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs12540218	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667420	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs12673714	0.88[YRI][hapmap]
rs12674206	0.80[YRI][hapmap]
rs13225246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13225250	1.00[CEU][hapmap]
rs13225815	1.00[CEU][hapmap]
rs13228312	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs13228553	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13228704	1.00[CEU][hapmap]
rs13233277	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13236734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13236937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13238527	1.00[CEU][hapmap]
rs17170767	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs17170789	1.00[CEU][hapmap]
rs17170792	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17170793	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17170794	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2373278	1.00[CEU][hapmap]
rs2373280	1.00[CEU][hapmap]
rs2373286	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2373289	0.96[YRI][hapmap]
rs28373395	0.81[AFR][1000 genomes]
rs28377968	0.89[AFR][1000 genomes]
rs28394241	0.89[AFR][1000 genomes]
rs28554472	0.89[AFR][1000 genomes]
rs28594409	0.89[AFR][1000 genomes]
rs28693625	0.83[AFR][1000 genomes]
rs34024797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34378091	0.90[ASN][1000 genomes]
rs34910390	0.92[ASN][1000 genomes]
rs34987081	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35100395	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35294118	0.97[ASN][1000 genomes]
rs35631331	0.92[ASN][1000 genomes]
rs36041591	0.90[ASN][1000 genomes]
rs4726904	0.89[YRI][hapmap]
rs4726905	0.92[YRI][hapmap]
rs4726906	0.88[YRI][hapmap]
rs4726907	0.92[YRI][hapmap]
rs57783871	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58083908	0.82[AFR][1000 genomes]
rs58092267	0.95[AFR][1000 genomes]
rs58526779	0.95[AFR][1000 genomes]
rs58848818	0.88[AFR][1000 genomes]
rs60119393	0.92[AFR][1000 genomes]
rs60692572	0.94[AFR][1000 genomes]
rs62473287	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62473289	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62473290	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6947287	1.00[CEU][hapmap]
rs6947595	1.00[CEU][hapmap]
rs6955458	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6957073	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs6962266	1.00[CEU][hapmap]
rs6970931	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs719310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73464297	0.83[AFR][1000 genomes]
rs73466110	0.89[AFR][1000 genomes]
rs73466115	0.87[AFR][1000 genomes]
rs73466190	0.88[AFR][1000 genomes]
rs7779961	0.84[JPT][hapmap]
rs7780623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781064	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7785350	0.85[JPT][hapmap]
rs7789579	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs7797584	1.00[CEU][hapmap]
rs7800075	0.85[JPT][hapmap]
rs7805706	1.00[CEU][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147708200-147709000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:147708600-147709200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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