Variant report
| Variant | rs7206015 |
|---|---|
| Chromosome Location | chr16:80594711-80594712 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80589493..80592966-chr16:80593921..80596964,3 | MCF-7 | breast: | |
| 2 | chr16:80593040..80595743-chr16:80600736..80603732,2 | K562 | blood: | |
| 3 | chr16:80576616..80579351-chr16:80593938..80597383,3 | MCF-7 | breast: | |
| 4 | chr16:80594243..80596595-chr16:80599585..80602236,2 | K562 | blood: | |
| 5 | chr16:80588433..80592032-chr16:80592068..80595320,4 | K562 | blood: | |
| 6 | chr16:80593676..80596340-chr16:80598060..80599713,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CDYL2-2 | chr16:80594621-80594776 | NONHSAT143893 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168589 | Chromatin interaction |
| ENSG00000260737 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs4273048 | 0.90[AFR][1000 genomes] |
| rs4561480 | 0.82[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs4622521 | 1.00[YRI][hapmap] |
| rs7199042 | 0.90[AFR][1000 genomes] |
| rs8061925 | 0.83[AFR][1000 genomes] |
| rs8062532 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv907001 | chr16:80405292-80620611 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv833300 | chr16:80475066-80601036 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1060621 | chr16:80532848-80980616 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 4 | nsv542989 | chr16:80532848-80980616 | Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
