Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80573756..80576188-chr16:80586618..80589955,4	MCF-7	breast:
2	chr16:80586826..80589239-chr16:80836999..80838815,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16953630	1.00[EUR][1000 genomes]
rs4258630	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4291914	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7186842	0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187446	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7188110	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7189758	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7191601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs726811	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580250	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580255	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580273	1.00[EUR][1000 genomes]
rs73580290	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580293	1.00[EUR][1000 genomes]
rs73580295	1.00[EUR][1000 genomes]
rs73580299	1.00[EUR][1000 genomes]
rs73588482	1.00[EUR][1000 genomes]
rs73588498	1.00[EUR][1000 genomes]
rs73588500	1.00[EUR][1000 genomes]
rs74029692	1.00[EUR][1000 genomes]
rs8049769	0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052782	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9937836	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80585800-80590800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr16:80586600-80588000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:80586800-80588000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:80587000-80592400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:80587400-80588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:80587400-80588400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr16:80587400-80589000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr16:80587400-80589000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr16:80587600-80588400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr16:80587600-80588400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr16:80587600-80588600	Enhancers	Primary T cells from cord blood	blood
12	chr16:80587600-80589200	Enhancers	Primary hematopoietic stem cells	blood
13	chr16:80587800-80588200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:80587800-80588400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr16:80587800-80588400	Enhancers	Fetal Muscle Leg	muscle
16	chr16:80587800-80588600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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