Variant report

Variant	rs7209512
Chromosome Location	chr17:34144460-34144461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr17:34144305-34144615	HepG2	liver:	n/a	n/a
2	POLR2A	chr17:34144222-34144575	K562	blood:	n/a	n/a
3	FOXA2	chr17:34144069-34144965	HepG2	liver:	n/a	n/a
4	POLR2A	chr17:34143967-34144537	K562	blood:	n/a	n/a
5	FOXA1	chr17:34144254-34145102	HepG2	liver:	n/a	chr17:34144463-34144478
6	FOXA1	chr17:34144256-34145055	HepG2	liver:	n/a	chr17:34144463-34144478
7	FOXA1	chr17:34144334-34144683	HepG2	liver:	n/a	chr17:34144463-34144478

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34134673..34137724-chr17:34141957..34146258,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267347	TF binding region
ENSG00000172660	Chromatin interaction
ENSG00000267578	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10451309	0.80[EUR][1000 genomes]
rs1065341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971570	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971585	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971624	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2735482	1.00[CEU][hapmap]
rs28912069	0.82[EUR][1000 genomes]
rs28914812	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914818	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251704	0.82[EUR][1000 genomes]
rs4251710	0.82[EUR][1000 genomes]
rs4251744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251770	0.85[AFR][1000 genomes]
rs4251776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59536691	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60040900	0.80[EUR][1000 genomes]
rs61590868	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7224965	0.80[EUR][1000 genomes]
rs8073456	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs965984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9674851	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9895464	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9898128	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9901469	0.80[EUR][1000 genomes]
rs9907320	0.80[EUR][1000 genomes]
rs9914929	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34137600-34149200	Weak transcription	Gastric	stomach
2	chr17:34137800-34144800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:34137800-34145000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:34137800-34149200	Weak transcription	Esophagus	oesophagus
5	chr17:34137800-34149800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:34137800-34152000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:34137800-34154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:34138000-34144800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr17:34138000-34144800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr17:34138000-34145200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr17:34138000-34146200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr17:34138000-34146800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr17:34138000-34149600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:34138000-34153400	Weak transcription	Right Ventricle	heart
15	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
16	chr17:34138200-34145800	Weak transcription	NHDF-Ad	bronchial
17	chr17:34138200-34149400	Weak transcription	HSMMtube	muscle
18	chr17:34138200-34149600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr17:34138200-34151600	Weak transcription	Fetal Heart	heart
20	chr17:34138400-34145200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr17:34138400-34146600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:34138800-34144600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr17:34139000-34144800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr17:34139000-34146200	Weak transcription	NH-A	brain
27	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr17:34139400-34145000	Genic enhancers	Dnd41	blood
29	chr17:34139400-34146800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr17:34139400-34149400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
33	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr17:34139600-34144600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr17:34139800-34144800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr17:34140200-34144800	Weak transcription	NHEK	skin
37	chr17:34140600-34148400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr17:34140800-34149600	Weak transcription	Fetal Brain Male	brain
39	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
41	chr17:34142000-34144600	Genic enhancers	A549	lung
42	chr17:34142000-34148000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr17:34142200-34145200	Enhancers	HepG2	liver
46	chr17:34142200-34152600	Strong transcription	Primary B cells from cord blood	blood
47	chr17:34142400-34144600	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr17:34142400-34145200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
49	chr17:34142400-34148600	Strong transcription	GM12878-XiMat	blood
50	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus

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