Variant report

Variant	rs7212976
Chromosome Location	chr17:38011912-38011913
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16965360	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35829084	1.00[AMR][1000 genomes]
rs61253581	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61744726	1.00[AMR][1000 genomes]
rs7213118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7215617	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7220943	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38000800-38017400	Weak transcription	Thymus	Thymus
2	chr17:38004400-38016800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr17:38005200-38014200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:38006200-38017400	Weak transcription	Fetal Thymus	thymus
5	chr17:38007200-38016600	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr17:38008400-38012800	Genic enhancers	Primary B cells from cord blood	blood
7	chr17:38009000-38016800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:38009200-38016200	Weak transcription	Primary T cells from cord blood	blood
9	chr17:38010200-38012600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:38010400-38012000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:38010600-38012000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
12	chr17:38010600-38012600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr17:38010600-38013400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:38010800-38012000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr17:38011000-38012000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr17:38011200-38012000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:38011800-38012000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr17:38011800-38012800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr17:38011800-38013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr17:38011800-38013600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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