Variant report

Variant	rs7219903
Chromosome Location	chr17:16492097-16492098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16487641..16489428-chr17:16491263..16493497,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59771043	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16488200-16492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:16488200-16492200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:16488200-16492200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr17:16488200-16492200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:16488200-16492200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr17:16488200-16492200	Weak transcription	Placenta	Placenta
7	chr17:16488200-16492200	Weak transcription	Left Ventricle	heart
8	chr17:16488200-16492200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr17:16488200-16492200	Weak transcription	Right Ventricle	heart
10	chr17:16488200-16492200	Weak transcription	HMEC	breast
11	chr17:16489200-16492200	Weak transcription	Lung	lung
12	chr17:16491800-16492200	Enhancers	Pancreas	Pancrea
13	chr17:16491800-16493000	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr17:16492000-16492200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr17:16492000-16492200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr17:16492000-16492200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr17:16492000-16492200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr17:16492000-16492200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr17:16492000-16492200	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:16492000-16492200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr17:16492000-16492200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
22	chr17:16492000-16492200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
23	chr17:16492000-16492200	Enhancers	Primary B cells from cord blood	blood
24	chr17:16492000-16492200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
25	chr17:16492000-16492200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr17:16492000-16492200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
27	chr17:16492000-16492200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
28	chr17:16492000-16492200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:16492000-16492200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:16492000-16492200	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr17:16492000-16492200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr17:16492000-16492200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr17:16492000-16492200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr17:16492000-16492200	Enhancers	Liver	Liver
35	chr17:16492000-16492200	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr17:16492000-16492200	Bivalent/Poised TSS	Colonic Mucosa	Colon
37	chr17:16492000-16492200	Enhancers	Colon Smooth Muscle	Colon
38	chr17:16492000-16492200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
39	chr17:16492000-16492200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr17:16492000-16492200	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr17:16492000-16492200	Enhancers	Psoas Muscle	Psoas
42	chr17:16492000-16492200	ZNF genes & repeats	A549	lung
43	chr17:16492000-16492200	Bivalent Enhancer	HepG2	liver
44	chr17:16492000-16492200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
45	chr17:16492000-16492400	Bivalent Enhancer	Fetal Heart	heart
46	chr17:16492000-16492400	Enhancers	Spleen	Spleen
47	chr17:16492000-16492600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
48	chr17:16492000-16492600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr17:16492000-16492600	Bivalent/Poised TSS	NHEK	skin
50	chr17:16492000-16492800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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