Variant report

Variant	rs7225544
Chromosome Location	chr17:37466326-37466327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37459079..37461538-chr17:37464843..37466379,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16968698	0.89[AFR][1000 genomes]
rs34136860	0.89[AFR][1000 genomes]
rs34170152	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34819548	0.92[AFR][1000 genomes]
rs34968503	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35152961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35800016	0.87[AFR][1000 genomes]
rs71369734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71369740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71369741	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71369742	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7222063	0.82[AFR][1000 genomes]
rs8071061	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8072801	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
9	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
12	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv510709	chr17:37438419-37508395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37425000-37473000	Weak transcription	Pancreas	Pancrea
2	chr17:37426800-37468600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:37431400-37473400	Weak transcription	Esophagus	oesophagus
4	chr17:37435600-37469400	Weak transcription	Gastric	stomach
5	chr17:37436000-37496200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:37436800-37497800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:37444000-37478400	Weak transcription	Psoas Muscle	Psoas
8	chr17:37453400-37507800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:37454000-37511600	Weak transcription	Hela-S3	cervix
10	chr17:37454600-37473600	Weak transcription	Brain Substantia Nigra	brain
11	chr17:37454800-37471800	Weak transcription	Left Ventricle	heart
12	chr17:37454800-37473800	Weak transcription	Spleen	Spleen
13	chr17:37454800-37474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:37455200-37499800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr17:37455400-37477400	Weak transcription	Ovary	ovary
16	chr17:37455400-37485200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:37455400-37495600	Weak transcription	Right Ventricle	heart
18	chr17:37455600-37484800	Weak transcription	Fetal Kidney	kidney
19	chr17:37455800-37495600	Weak transcription	Brain Germinal Matrix	brain
20	chr17:37456200-37499400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr17:37456400-37479800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr17:37457600-37471800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr17:37457600-37497800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr17:37458000-37495000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:37458400-37472000	Weak transcription	Placenta	Placenta
26	chr17:37458800-37476200	Weak transcription	Fetal Brain Female	brain
27	chr17:37459400-37472200	Weak transcription	K562	blood
28	chr17:37459400-37474200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr17:37459400-37491000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:37459400-37495600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr17:37459600-37471800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr17:37459800-37472400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr17:37460200-37471800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr17:37460200-37486800	Weak transcription	Fetal Intestine Large	intestine
35	chr17:37460200-37497600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr17:37460400-37498400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr17:37461000-37470600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr17:37461000-37470600	Weak transcription	Fetal Muscle Leg	muscle
39	chr17:37461000-37474600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr17:37461000-37497400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr17:37461000-37497600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr17:37461200-37466600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr17:37461200-37471800	Weak transcription	Primary T cells from cord blood	blood
44	chr17:37461200-37472600	Weak transcription	Fetal Thymus	thymus
45	chr17:37461200-37480600	Weak transcription	Liver	Liver
46	chr17:37461200-37481800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr17:37461200-37485000	Weak transcription	HepG2	liver
48	chr17:37461200-37495200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr17:37461200-37495400	Weak transcription	Thymus	Thymus
50	chr17:37461200-37515400	Weak transcription	Lung	lung

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