Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12326934	0.88[EUR][1000 genomes]
rs16943055	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16943181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28433105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3889350	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56403102	0.97[EUR][1000 genomes]
rs58569620	0.88[EUR][1000 genomes]
rs60167332	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61089873	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61998173	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6508460	0.88[EUR][1000 genomes]
rs6508461	0.88[EUR][1000 genomes]
rs6508463	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67822335	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7232288	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7237212	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7238255	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880575	0.97[EUR][1000 genomes]
rs8085829	1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs8086337	0.88[EUR][1000 genomes]
rs8088793	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs8091201	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24570400-24598200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:24589400-24598600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:24589600-24598800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:24589800-24594600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:24591000-24595200	Weak transcription	Pancreas	Pancrea
6	chr18:24591000-24601200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:24594400-24594800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search: