Variant report

Variant	rs7232060
Chromosome Location	chr18:30346065-30346066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12232690	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1523576	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17738786	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17851892	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62092151	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7234849	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7241727	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8084642	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086995	0.80[AMR][1000 genomes]
rs9946321	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9954239	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30341800-30347200	Enhancers	Primary B cells from cord blood	blood
2	chr18:30342200-30347400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:30343000-30346200	Enhancers	HepG2	liver
4	chr18:30343800-30348200	Weak transcription	Fetal Brain Male	brain
5	chr18:30344000-30347400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr18:30344200-30348800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:30345400-30347400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:30345800-30349600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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