Variant report

Variant	rs7235638
Chromosome Location	chr18:30310380-30310381
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13339718	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963740	1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16963802	1.00[CHB][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435690	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448643	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689524	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7230398	1.00[CHB][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231950	1.00[CHB][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7238067	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73955260	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73955268	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085109	1.00[ASN][1000 genomes]
rs8089631	1.00[EUR][1000 genomes]
rs9950337	1.00[EUR][1000 genomes]
rs9951832	1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9958052	0.91[YRI][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30308200-30310600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:30308400-30310800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr18:30308400-30310800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr18:30308800-30311400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:30309200-30310400	Genic enhancers	Primary B cells from cord blood	blood
6	chr18:30309400-30311200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr18:30309400-30312400	Weak transcription	HepG2	liver
8	chr18:30309600-30312200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:30309800-30310600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:30310000-30310400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr18:30310000-30310400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr18:30310000-30310400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr18:30310000-30310400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr18:30310000-30310400	Enhancers	Liver	Liver
15	chr18:30310000-30310400	Enhancers	Rectal Smooth Muscle	rectum
16	chr18:30310000-30310400	Enhancers	HSMM	muscle
17	chr18:30310000-30310400	Enhancers	HSMMtube	muscle
18	chr18:30310000-30311200	Enhancers	Primary B cells from peripheral blood	blood
19	chr18:30310000-30311200	Active TSS	Brain Hippocampus Middle	brain
20	chr18:30310000-30311200	Active TSS	Ovary	ovary
21	chr18:30310000-30311200	Active TSS	Psoas Muscle	Psoas
22	chr18:30310000-30311200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr18:30310000-30311200	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr18:30310000-30311200	Flanking Active TSS	Dnd41	blood
25	chr18:30310000-30311200	Active TSS	Osteobl	bone
26	chr18:30310000-30311400	Active TSS	Muscle Satellite Cultured Cells	--
27	chr18:30310000-30311400	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr18:30310200-30310400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr18:30310200-30310400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr18:30310200-30310400	Enhancers	GM12878-XiMat	blood
31	chr18:30310200-30310600	Enhancers	Brain Germinal Matrix	brain
32	chr18:30310200-30310600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr18:30310200-30310800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr18:30310200-30311000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr18:30310200-30311000	Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr18:30310200-30311000	Active TSS	Adipose Nuclei	Adipose
37	chr18:30310200-30311000	Active TSS	Colon Smooth Muscle	Colon
38	chr18:30310200-30311200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr18:30310200-30311200	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr18:30310200-30311200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr18:30310200-30311200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr18:30310200-30311200	Active TSS	Brain Anterior Caudate	brain
43	chr18:30310200-30311200	Active TSS	Brain Substantia Nigra	brain
44	chr18:30310200-30311200	Active TSS	Duodenum Mucosa	Duodenum
45	chr18:30310200-30311200	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr18:30310200-30311200	Active TSS	Fetal Brain Female	brain
47	chr18:30310200-30311200	Flanking Active TSS	Fetal Kidney	kidney
48	chr18:30310200-30311200	Active TSS	Fetal Muscle Leg	muscle
49	chr18:30310200-30311200	Active TSS	Stomach Smooth Muscle	stomach
50	chr18:30310200-30311200	Active TSS	HMEC	breast

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