Variant report

Variant	rs723587
Chromosome Location	chr6:81056360-81056361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1179576	0.86[YRI][hapmap]
rs1179577	0.86[YRI][hapmap]
rs1184704	0.86[YRI][hapmap]
rs11961331	0.80[ASN][1000 genomes]
rs11966170	0.80[ASN][1000 genomes]
rs1320614	0.80[ASN][1000 genomes]
rs1320615	0.80[ASN][1000 genomes]
rs1320616	0.80[ASN][1000 genomes]
rs1341278	0.92[MEX][hapmap]
rs34758321	0.80[ASN][1000 genomes]
rs4134487	0.80[ASN][1000 genomes]
rs4235811	0.86[YRI][hapmap]
rs581860	0.84[YRI][hapmap]
rs58780569	0.80[ASN][1000 genomes]
rs588186	0.85[YRI][hapmap]
rs59904615	0.80[ASN][1000 genomes]
rs606319	0.86[YRI][hapmap]
rs632362	0.86[YRI][hapmap]
rs636361	0.86[YRI][hapmap]
rs636464	0.86[YRI][hapmap]
rs637323	0.86[YRI][hapmap]
rs651314	0.86[YRI][hapmap]
rs653582	0.85[YRI][hapmap]
rs653596	0.86[YRI][hapmap]
rs653959	0.84[YRI][hapmap]
rs654435	0.86[YRI][hapmap]
rs660208	0.86[YRI][hapmap]
rs662408	0.86[YRI][hapmap]
rs666032	0.86[YRI][hapmap]
rs676310	0.86[YRI][hapmap]
rs689407	0.86[YRI][hapmap]
rs6906534	0.86[YRI][hapmap]
rs6921240	0.80[ASN][1000 genomes]
rs6921246	0.80[ASN][1000 genomes]
rs6921321	0.80[ASN][1000 genomes]
rs6927954	0.86[YRI][hapmap]
rs700490	0.86[YRI][hapmap]
rs723307	0.86[YRI][hapmap]
rs723588	0.82[ASN][1000 genomes]
rs73467561	0.80[ASN][1000 genomes]
rs73467566	0.80[ASN][1000 genomes]
rs73467567	0.80[ASN][1000 genomes]
rs73467571	0.80[ASN][1000 genomes]
rs73467576	0.80[ASN][1000 genomes]
rs7742286	0.86[YRI][hapmap]
rs7745921	0.80[ASN][1000 genomes]
rs7766087	0.80[ASN][1000 genomes]
rs7766633	0.80[ASN][1000 genomes]
rs9341812	0.80[ASN][1000 genomes]
rs9343983	0.80[ASN][1000 genomes]
rs9350852	0.80[ASN][1000 genomes]
rs9350853	0.80[ASN][1000 genomes]
rs9352820	0.80[ASN][1000 genomes]
rs9352821	0.80[ASN][1000 genomes]
rs9352823	0.80[ASN][1000 genomes]
rs9352824	0.80[ASN][1000 genomes]
rs9352825	0.80[ASN][1000 genomes]
rs9352827	0.80[ASN][1000 genomes]
rs9352829	0.80[ASN][1000 genomes]
rs9359414	0.80[ASN][1000 genomes]
rs9361603	0.80[ASN][1000 genomes]
rs9361604	0.80[ASN][1000 genomes]
rs9361607	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv970303	chr6:81050335-81062570	Enhancers Weak transcription	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81029400-81079600	Weak transcription	HSMM	muscle
2	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
3	chr6:81042200-81056400	Weak transcription	Fetal Heart	heart
4	chr6:81048200-81058000	Weak transcription	Psoas Muscle	Psoas
5	chr6:81048200-81066800	Weak transcription	Pancreas	Pancrea
6	chr6:81048400-81064200	Weak transcription	Liver	Liver
7	chr6:81050400-81071200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:81051600-81059200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:81051800-81056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:81053600-81073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:81056200-81057200	Enhancers	Skeletal Muscle Female	skeletal muscle

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