Variant report

Variant	rs7238067
Chromosome Location	chr18:30277256-30277257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13339718	1.00[ASN][1000 genomes]
rs16963740	1.00[CHB][hapmap]
rs16963802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28435690	1.00[ASN][1000 genomes]
rs28448643	1.00[ASN][1000 genomes]
rs28564043	1.00[ASN][1000 genomes]
rs689524	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7230398	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7231950	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7235638	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73955260	1.00[ASN][1000 genomes]
rs73955268	1.00[ASN][1000 genomes]
rs8085109	1.00[ASN][1000 genomes]
rs9951832	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060732	chr18:30267156-30304435	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1062187	chr18:30267156-30306081	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1056335	chr18:30267904-30305840	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1059928	chr18:30267904-30306081	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1062522	chr18:30268383-30306081	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30260400-30282200	Weak transcription	Fetal Kidney	kidney
2	chr18:30275400-30278000	Weak transcription	HepG2	liver
3	chr18:30275400-30284000	Weak transcription	Primary B cells from cord blood	blood
4	chr18:30276000-30284200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr18:30276200-30278200	Weak transcription	HSMM	muscle
6	chr18:30276400-30278800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr18:30277000-30278000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr18:30277200-30278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:30277200-30278400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr18:30277200-30278600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr18:30277200-30286000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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