The 2.0 version of rSNPBase

Variant report

Variant rs72470587
Chromosome Location chr1:220964138-220964139
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220960600-220964800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
2 chr1:220960800-220964400 Weak transcription Lung lung
3 chr1:220960800-220965200 Weak transcription Small Intestine intestine
4 chr1:220961000-220964200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:220961000-220964200 Weak transcription Gastric stomach
6 chr1:220961000-220964600 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr1:220961000-220964600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:220961000-220964600 Weak transcription Psoas Muscle Psoas
9 chr1:220961000-220964600 Weak transcription HMEC breast
10 chr1:220961000-220964800 Weak transcription Right Ventricle heart
11 chr1:220961000-220964800 Weak transcription HUVEC blood vessel
12 chr1:220961000-220970200 Weak transcription Fetal Kidney kidney
13 chr1:220961000-220971200 Weak transcription Spleen Spleen
14 chr1:220961000-220973400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:220961000-220976800 Weak transcription Ovary ovary
16 chr1:220961000-220978200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:220961000-220982200 Weak transcription Brain Substantia Nigra brain
18 chr1:220961200-220964200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:220961200-220964600 Weak transcription Left Ventricle heart
20 chr1:220961200-220964800 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:220961200-220965000 Weak transcription Brain Anterior Caudate brain
22 chr1:220961200-220971200 Weak transcription Stomach Smooth Muscle stomach
23 chr1:220961400-220970600 Weak transcription H1 Cell Line embryonic stem cell
24 chr1:220961400-220983800 Weak transcription Esophagus oesophagus
25 chr1:220961600-220965000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:220961600-220965000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:220961600-220965800 Enhancers Primary monocytes fromperipheralblood blood
28 chr1:220961600-220966600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:220961600-220969400 Weak transcription Duodenum Mucosa Duodenum
30 chr1:220961600-220970000 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr1:220961600-220970600 Weak transcription Fetal Brain Female brain
32 chr1:220961600-220971000 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr1:220961600-220975000 Weak transcription Brain Angular Gyrus brain
34 chr1:220961600-220975200 Weak transcription Brain Cingulate Gyrus brain
35 chr1:220961600-220983600 Weak transcription Pancreas Pancrea
36 chr1:220961800-220964200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:220961800-220964200 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr1:220961800-220964400 Weak transcription iPS-20b Cell Line embryonic stem cell
39 chr1:220961800-220964400 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr1:220961800-220964600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
41 chr1:220961800-220964600 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr1:220961800-220966000 Enhancers Liver Liver
43 chr1:220961800-220967000 Weak transcription Brain Hippocampus Middle brain
44 chr1:220961800-220969600 Weak transcription Stomach Mucosa stomach
45 chr1:220961800-220969800 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr1:220961800-220970000 Weak transcription Fetal Stomach stomach
47 chr1:220961800-220971600 Weak transcription Brain Germinal Matrix brain
48 chr1:220961800-220972000 Weak transcription Rectal Smooth Muscle rectum
49 chr1:220961800-220974200 Weak transcription iPS-15b Cell Line embryonic stem cell
50 chr1:220961800-220979800 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015