Variant report

Variant	rs725243
Chromosome Location	chr14:37573431-37573432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37192459..37195312-chr14:37570603..37573601,2	K562	blood:

Variant related genes	Relation type
ENSG00000183032	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1012198	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10134406	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10141752	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10220604	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1057564	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12889634	0.82[CEU][hapmap]
rs1404	0.95[EUR][1000 genomes]
rs17091939	1.00[CEU][hapmap]
rs17106209	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17106216	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17106493	0.90[EUR][1000 genomes]
rs17106509	1.00[CEU][hapmap]
rs17178484	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17178639	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17178764	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17767749	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17767929	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17841015	1.00[CEU][hapmap]
rs1884775	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1950372	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1950814	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1955758	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1956423	1.00[CEU][hapmap]
rs1956424	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2038309	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2057171	0.82[CEU][hapmap]
rs2144318	0.87[EUR][1000 genomes]
rs2415373	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2415379	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2415380	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2415384	0.82[CEU][hapmap]
rs2415386	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35576618	1.00[CEU][hapmap]
rs4356385	0.87[EUR][1000 genomes]
rs56666059	0.90[EUR][1000 genomes]
rs57235322	0.95[EUR][1000 genomes]
rs6571781	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6571782	0.82[CEU][hapmap]
rs6571783	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6571785	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6571786	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6571787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6571788	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7142723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151524	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7159967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8005564	0.82[CEU][hapmap]
rs8009630	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8012664	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8014610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017826	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8019489	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs976171	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links