Variant report

Variant	rs7252470
Chromosome Location	chr19:42945016-42945017
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:42944402..42946255-chr19:42946762..42949162,2	MCF-7	breast:
2	chr19:42612633..42613326-chr19:42943887..42945182,4	MCF-7	breast:
3	chr19:42612391..42613298-chr19:42944161..42945178,7	K562	blood:
4	chr19:42611988..42612944-chr19:42944219..42945249,3	MCF-7	breast:
5	chr19:42944641..42946471-chr19:42946683..42948595,2	K562	blood:

Variant related genes	Relation type
ENSG00000189377	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10405891	1.00[EUR][1000 genomes]
rs10411253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10414969	1.00[EUR][1000 genomes]
rs10416062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10417560	1.00[EUR][1000 genomes]
rs10422000	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13345659	1.00[EUR][1000 genomes]
rs16975743	1.00[EUR][1000 genomes]
rs16975750	1.00[EUR][1000 genomes]
rs28448880	1.00[EUR][1000 genomes]
rs28514561	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35623577	1.00[EUR][1000 genomes]
rs7245385	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7248439	1.00[EUR][1000 genomes]
rs7251638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7254369	0.85[AFR][1000 genomes]
rs7254839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7255015	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556352	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556356	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8102976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8103108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42929600-42945200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:42938000-42945200	Weak transcription	Fetal Stomach	stomach
3	chr19:42938000-42946200	Enhancers	Adipose Nuclei	Adipose
4	chr19:42938000-42946800	Weak transcription	Right Ventricle	heart
5	chr19:42938000-42950200	Weak transcription	Gastric	stomach
6	chr19:42938000-42954200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr19:42943200-42947400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr19:42944400-42945600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr19:42944400-42945800	Enhancers	Duodenum Mucosa	Duodenum
10	chr19:42944400-42946000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr19:42944400-42946000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr19:42944400-42946000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:42944400-42946200	Enhancers	Primary hematopoietic stem cells	blood
14	chr19:42944400-42946800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr19:42944400-42947000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr19:42944400-42947000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:42944400-42947000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr19:42944400-42947000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr19:42944600-42945200	Enhancers	Primary T cells from cord blood	blood
20	chr19:42944600-42945200	Enhancers	Brain Anterior Caudate	brain
21	chr19:42944600-42945400	Enhancers	Liver	Liver
22	chr19:42944600-42945600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:42944600-42945600	Flanking Active TSS	HepG2	liver
24	chr19:42944600-42945800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr19:42944600-42945800	Enhancers	Fetal Intestine Small	intestine
26	chr19:42944600-42945800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr19:42944600-42946000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr19:42944600-42946000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr19:42944600-42946200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr19:42944600-42947200	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr19:42944600-42947400	Enhancers	Primary B cells from cord blood	blood
32	chr19:42944600-42947600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr19:42944800-42945200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr19:42944800-42945200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:42944800-42945400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr19:42944800-42945400	Enhancers	Colonic Mucosa	Colon
37	chr19:42944800-42945400	Enhancers	Left Ventricle	heart
38	chr19:42944800-42945600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr19:42944800-42945600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:42944800-42945600	Enhancers	Pancreas	Pancrea
41	chr19:42944800-42945600	Enhancers	GM12878-XiMat	blood
42	chr19:42944800-42945800	Enhancers	Esophagus	oesophagus
43	chr19:42944800-42945800	Flanking Active TSS	Stomach Mucosa	stomach
44	chr19:42944800-42946000	Enhancers	Fetal Intestine Large	intestine
45	chr19:42944800-42946000	Enhancers	Fetal Lung	lung
46	chr19:42944800-42946000	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr19:42944800-42946200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr19:42944800-42946200	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr19:42944800-42946400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr19:42944800-42947200	Enhancers	Fetal Thymus	thymus

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