Variant report

Variant	rs7255504
Chromosome Location	chr19:52770522-52770523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10404635	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10425462	0.92[ASN][1000 genomes]
rs10425644	0.96[ASN][1000 genomes]
rs2089275	0.90[ASN][1000 genomes]
rs2560871	0.90[ASN][1000 genomes]
rs2560873	0.90[ASN][1000 genomes]
rs2560877	0.92[ASN][1000 genomes]
rs2657923	0.90[ASN][1000 genomes]
rs2657924	0.90[ASN][1000 genomes]
rs2657926	0.90[ASN][1000 genomes]
rs2657930	0.92[ASN][1000 genomes]
rs56211703	0.87[ASN][1000 genomes]
rs56369375	1.00[ASN][1000 genomes]
rs62110397	0.90[ASN][1000 genomes]
rs62110398	0.90[ASN][1000 genomes]
rs8107325	0.90[ASN][1000 genomes]
rs8113537	1.00[ASN][1000 genomes]
rs9304726	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
2	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv544059	chr19:52502213-52890308	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52758600-52772200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr19:52763400-52772200	Weak transcription	Placenta	Placenta
3	chr19:52770000-52772200	Weak transcription	HepG2	liver
4	chr19:52770400-52772200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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