Variant report

Variant	rs725891
Chromosome Location	chr14:22155761-22155762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10137047	0.82[EUR][1000 genomes]
rs10141478	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10146733	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs10147663	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1076545	0.86[EUR][1000 genomes]
rs12434471	0.87[YRI][hapmap]
rs12435524	1.00[CEU][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs12436422	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs12436446	1.00[CEU][hapmap]
rs2204931	0.93[EUR][1000 genomes]
rs2319874	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2319875	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28698926	0.89[EUR][1000 genomes]
rs35762321	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3748364	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4982482	1.00[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs4982483	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4982486	0.82[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs4982487	0.82[MEX][hapmap];0.80[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs55654479	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6571976	1.00[CEU][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs7144733	1.00[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs8006599	0.87[CEU][hapmap]
rs8008166	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs8017708	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9323020	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs9635159	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422459	chr14:21931624-22169502	Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
3	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv510629	chr14:22134425-22215842	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs725891	TEP1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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