Variant report

Variant	rs72603510
Chromosome Location	chr7:101532383-101532384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101530702..101533237-chr7:101584032..101585932,2	MCF-7	breast:
2	chr7:101532182..101534977-chr7:101535294..101537125,2	K562	blood:
3	chr7:101526289..101528067-chr7:101530737..101533297,2	K562	blood:
4	chr7:101526222..101527789-chr7:101530737..101532472,2	K562	blood:
5	chr7:101527942..101530347-chr7:101531830..101534316,3	K562	blood:
6	chr7:101525890..101527612-chr7:101531987..101533703,2	MCF-7	breast:
7	chr7:101526144..101529822-chr7:101529905..101534800,8	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10081174	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10226289	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227516	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10240601	0.92[EUR][1000 genomes]
rs10241905	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10242019	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10255356	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256232	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259103	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261524	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264844	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264855	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264866	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271171	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271610	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10271838	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10275899	0.86[AMR][1000 genomes]
rs10279763	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12532535	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534641	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12539310	0.92[AMR][1000 genomes]
rs13227531	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229243	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13236072	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13241079	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13241252	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2410921	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28409703	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34750675	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35065711	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4729756	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4729757	0.85[AMR][1000 genomes]
rs4729759	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729760	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55824493	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60656667	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72603509	0.92[AMR][1000 genomes]
rs72603511	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72603512	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9656073	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101523200-101543200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:101526000-101540400	Weak transcription	Aorta	Aorta
3	chr7:101526200-101536800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101526400-101533200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:101526400-101534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:101526400-101542200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:101526600-101533200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:101526800-101534600	Weak transcription	HSMMtube	muscle
9	chr7:101526800-101543000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:101527000-101534400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:101527000-101538600	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:101527000-101543000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:101527000-101543000	Weak transcription	NHEK	skin
14	chr7:101527200-101542200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:101528000-101536400	Weak transcription	K562	blood
16	chr7:101528200-101533200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:101528200-101533400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:101528200-101535200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:101528200-101535200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:101528200-101535400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:101528200-101539600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:101528400-101533200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:101528400-101533600	Strong transcription	Fetal Intestine Small	intestine
24	chr7:101528400-101534000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:101528600-101532800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:101528600-101535200	Weak transcription	Fetal Intestine Large	intestine
27	chr7:101528600-101555200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:101528800-101538600	Weak transcription	Dnd41	blood
29	chr7:101528800-101544000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:101529000-101533200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:101529000-101534600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:101529200-101533400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:101529200-101535400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:101529400-101534000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:101529400-101534000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:101529400-101534600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:101529400-101534600	Weak transcription	Brain Germinal Matrix	brain
38	chr7:101529400-101539000	Weak transcription	Thymus	Thymus
39	chr7:101529400-101539400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:101529400-101539600	Weak transcription	Fetal Heart	heart
41	chr7:101529400-101543000	Weak transcription	Brain Substantia Nigra	brain
42	chr7:101529400-101554200	Weak transcription	Primary T cells from cord blood	blood
43	chr7:101529600-101534000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:101529600-101534800	Weak transcription	Liver	Liver
45	chr7:101529600-101534800	Weak transcription	Fetal Brain Female	brain
46	chr7:101529800-101535400	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:101530000-101533200	Weak transcription	Psoas Muscle	Psoas
48	chr7:101530200-101534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:101530200-101538800	Weak transcription	Fetal Thymus	thymus
50	chr7:101530200-101539600	Weak transcription	Pancreas	Pancrea

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