Variant report

Variant	rs72610828
Chromosome Location	chr6:101510458-101510459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10782325	0.84[ASN][1000 genomes]
rs11155850	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11155852	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11155855	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12164026	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4133169	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4143742	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4291101	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4329122	0.85[ASN][1000 genomes]
rs4376359	0.84[ASN][1000 genomes]
rs4385317	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4598083	0.84[ASN][1000 genomes]
rs57795969	0.81[ASN][1000 genomes]
rs58920424	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61647432	0.85[ASN][1000 genomes]
rs6905979	0.84[ASN][1000 genomes]
rs6912251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915514	0.84[ASN][1000 genomes]
rs6925287	0.98[ASN][1000 genomes]
rs6938926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72610830	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72610831	0.85[ASN][1000 genomes]
rs72610833	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72610834	0.84[ASN][1000 genomes]
rs72610835	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72610837	0.87[AMR][1000 genomes]
rs7749035	0.84[ASN][1000 genomes]
rs7753454	0.84[ASN][1000 genomes]
rs7753811	0.84[ASN][1000 genomes]
rs7754468	0.85[ASN][1000 genomes]
rs7768736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768876	0.84[ASN][1000 genomes]
rs7773911	0.83[ASN][1000 genomes]
rs9322333	0.84[ASN][1000 genomes]
rs9322380	0.84[ASN][1000 genomes]
rs9373603	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9377246	0.81[ASN][1000 genomes]
rs9377247	0.81[ASN][1000 genomes]
rs9377259	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9377260	0.98[ASN][1000 genomes]
rs9377261	0.98[ASN][1000 genomes]
rs9377262	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9386270	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9390720	0.85[ASN][1000 genomes]
rs9390721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390722	0.85[ASN][1000 genomes]
rs9390723	0.85[ASN][1000 genomes]
rs9390725	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9390731	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9390732	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9399704	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9399705	0.84[ASN][1000 genomes]
rs9399706	0.84[ASN][1000 genomes]
rs9399712	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9404063	0.81[ASN][1000 genomes]
rs9404080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404083	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9404085	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9404089	0.87[AMR][1000 genomes]
rs9485452	0.82[ASN][1000 genomes]
rs9485453	0.84[ASN][1000 genomes]
rs9485455	0.84[ASN][1000 genomes]
rs9498474	0.85[ASN][1000 genomes]
rs9498478	0.84[ASN][1000 genomes]
rs9498484	0.84[ASN][1000 genomes]
rs9498485	0.84[ASN][1000 genomes]
rs9498488	0.84[ASN][1000 genomes]
rs9498491	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv2763587	chr6:101277874-101510491	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101510400-101514400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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