Variant report

Variant	rs72622477
Chromosome Location	chr14:56314797-56314798
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10498479	0.91[AFR][1000 genomes]
rs12587196	0.85[ASN][1000 genomes]
rs17128859	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17128880	0.85[AFR][1000 genomes]
rs17832491	0.93[EUR][1000 genomes]
rs2342841	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4901608	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4901613	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58176451	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67462753	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72622474	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72723577	0.93[EUR][1000 genomes]
rs72723579	0.86[EUR][1000 genomes]
rs72723580	0.83[EUR][1000 genomes]
rs72723583	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56306200-56314800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:56311000-56314800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:56311000-56316800	Weak transcription	Stomach Mucosa	stomach
4	chr14:56312600-56315600	Enhancers	NHDF-Ad	bronchial
5	chr14:56312800-56315200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:56312800-56315200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:56312800-56315400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:56313000-56315000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:56313000-56315200	Enhancers	Osteobl	bone
10	chr14:56313200-56315200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:56313200-56315200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:56313200-56315200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:56313200-56315200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:56313400-56315000	Enhancers	A549	lung
15	chr14:56313400-56316800	Weak transcription	Right Atrium	heart
16	chr14:56313800-56314800	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:56313800-56314800	Enhancers	NH-A	brain
18	chr14:56313800-56315200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:56313800-56315200	Enhancers	Aorta	Aorta
20	chr14:56313800-56315200	Enhancers	HSMM	muscle
21	chr14:56313800-56315200	Enhancers	NHLF	lung
22	chr14:56313800-56316400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:56314000-56314800	Enhancers	Brain Angular Gyrus	brain
24	chr14:56314000-56315200	Enhancers	HSMMtube	muscle
25	chr14:56314200-56315000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr14:56314400-56317000	Weak transcription	Adipose Nuclei	Adipose
27	chr14:56314400-56317400	Weak transcription	Hela-S3	cervix
28	chr14:56314600-56317200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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