Variant report

Variant	rs72626251
Chromosome Location	chr19:52655304-52655305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12462729	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12608745	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12609494	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12609518	0.83[ASN][1000 genomes]
rs12611170	0.84[ASN][1000 genomes]
rs12611229	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17696575	0.84[ASN][1000 genomes]
rs17769264	0.84[ASN][1000 genomes]
rs35322037	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35897677	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36018306	0.88[ASN][1000 genomes]
rs57312963	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58547594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61641512	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66480428	0.84[ASN][1000 genomes]
rs66966048	0.84[ASN][1000 genomes]
rs67606249	0.84[ASN][1000 genomes]
rs67664388	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
2	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv544059	chr19:52502213-52890308	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2762047	chr19:52647312-52668951	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv817856	chr19:52647893-52668697	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52644000-52658000	Weak transcription	Fetal Kidney	kidney
2	chr19:52644000-52658400	Weak transcription	Brain Substantia Nigra	brain
3	chr19:52644000-52658800	Weak transcription	Right Ventricle	heart
4	chr19:52644200-52656800	Weak transcription	Brain Germinal Matrix	brain
5	chr19:52644200-52658200	Weak transcription	Right Atrium	heart
6	chr19:52644400-52657800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr19:52644400-52658000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr19:52644600-52656800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr19:52645200-52659400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr19:52650400-52658600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr19:52650800-52657800	Weak transcription	Fetal Brain Male	brain
12	chr19:52651600-52658400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr19:52651600-52667200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:52652400-52655600	Weak transcription	Fetal Lung	lung
15	chr19:52652400-52656400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr19:52652600-52657400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:52653000-52657400	Weak transcription	Left Ventricle	heart
18	chr19:52653200-52656800	Weak transcription	Fetal Stomach	stomach
19	chr19:52653600-52656400	Weak transcription	Ovary	ovary
20	chr19:52653800-52670600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:52654000-52667200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:52654000-52669000	ZNF genes & repeats	Liver	Liver
23	chr19:52654400-52671600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr19:52654600-52669200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:52655200-52657800	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links