Variant report

Variant	rs72629702
Chromosome Location	chr1:225091357-225091358
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224690531..224692939-chr1:225090121..225091739,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10158926	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10495228	0.85[ASN][1000 genomes]
rs10495229	0.81[ASN][1000 genomes]
rs1080260	0.86[ASN][1000 genomes]
rs1110378	0.99[ASN][1000 genomes]
rs12563434	0.95[EUR][1000 genomes]
rs12564683	0.84[ASN][1000 genomes]
rs12565019	0.85[ASN][1000 genomes]
rs12565439	0.81[ASN][1000 genomes]
rs12566396	0.81[ASN][1000 genomes]
rs12566886	0.81[ASN][1000 genomes]
rs12567461	0.85[ASN][1000 genomes]
rs12567470	0.85[ASN][1000 genomes]
rs1506072	0.85[ASN][1000 genomes]
rs1600865	0.84[ASN][1000 genomes]
rs16857787	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16858145	0.85[ASN][1000 genomes]
rs16858216	0.85[ASN][1000 genomes]
rs16858299	0.84[ASN][1000 genomes]
rs16858661	0.81[ASN][1000 genomes]
rs16858758	0.81[ASN][1000 genomes]
rs16858766	0.81[ASN][1000 genomes]
rs16858829	0.81[ASN][1000 genomes]
rs16858831	0.81[ASN][1000 genomes]
rs16858932	0.81[ASN][1000 genomes]
rs16858962	0.81[ASN][1000 genomes]
rs1936629	0.84[ASN][1000 genomes]
rs1936631	0.99[ASN][1000 genomes]
rs1936635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101143	0.85[ASN][1000 genomes]
rs2254158	0.93[EUR][1000 genomes]
rs2254406	0.95[EUR][1000 genomes]
rs2291227	0.81[ASN][1000 genomes]
rs2406097	0.98[ASN][1000 genomes]
rs2406098	0.83[ASN][1000 genomes]
rs2449269	0.99[ASN][1000 genomes]
rs2449315	0.85[ASN][1000 genomes]
rs2449316	0.81[ASN][1000 genomes]
rs2449320	0.88[ASN][1000 genomes]
rs2489296	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489300	0.81[ASN][1000 genomes]
rs2489302	0.80[ASN][1000 genomes]
rs2489303	0.89[ASN][1000 genomes]
rs2489310	0.84[ASN][1000 genomes]
rs2489311	0.99[ASN][1000 genomes]
rs2489313	0.99[ASN][1000 genomes]
rs2489324	0.88[ASN][1000 genomes]
rs2501061	0.81[ASN][1000 genomes]
rs2501064	0.81[ASN][1000 genomes]
rs2501066	0.81[ASN][1000 genomes]
rs2501072	0.81[ASN][1000 genomes]
rs2501078	0.88[ASN][1000 genomes]
rs2501081	0.85[ASN][1000 genomes]
rs2501082	0.99[ASN][1000 genomes]
rs2501083	0.99[ASN][1000 genomes]
rs2501085	0.99[ASN][1000 genomes]
rs2501087	0.97[ASN][1000 genomes]
rs2501099	0.96[EUR][1000 genomes]
rs2501120	0.85[ASN][1000 genomes]
rs2501140	0.81[ASN][1000 genomes]
rs2501141	0.81[ASN][1000 genomes]
rs2501147	0.89[ASN][1000 genomes]
rs2501151	0.89[ASN][1000 genomes]
rs2501153	0.81[ASN][1000 genomes]
rs2501156	0.81[ASN][1000 genomes]
rs4379650	0.81[ASN][1000 genomes]
rs55668169	0.81[ASN][1000 genomes]
rs55754430	0.85[ASN][1000 genomes]
rs56088704	0.81[ASN][1000 genomes]
rs56152573	0.81[ASN][1000 genomes]
rs56203783	0.83[ASN][1000 genomes]
rs57137890	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59420435	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61466304	0.85[ASN][1000 genomes]
rs6426163	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72629701	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729398	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225090000-225091400	Weak transcription	Fetal Thymus	thymus

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