Variant report

Variant	rs72632666
Chromosome Location	chr13:96323708-96323709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:96323652..96326335-chr13:96327203..96330421,3	K562	blood:
2	chr13:96323460..96326525-chr13:96328286..96330704,4	MCF-7	breast:
3	chr13:96321544..96324613-chr13:96328623..96330410,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102580	Chromatin interaction
ENSG00000247400	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12583253	0.82[ASN][1000 genomes]
rs12583374	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12585001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12585954	1.00[AFR][1000 genomes]
rs17881101	0.82[ASN][1000 genomes]
rs17882362	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2289812	0.82[ASN][1000 genomes]
rs2289813	0.82[ASN][1000 genomes]
rs3759446	0.85[EUR][1000 genomes]
rs3848075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58498169	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60253451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556498	0.82[ASN][1000 genomes]
rs9561922	0.83[EUR][1000 genomes]
rs9561933	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561938	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561944	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9561952	0.82[ASN][1000 genomes]
rs9561954	0.82[ASN][1000 genomes]
rs9561958	0.82[ASN][1000 genomes]
rs9669929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96317400-96327000	ZNF genes & repeats	Liver	Liver
2	chr13:96322800-96326200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:96323000-96324400	ZNF genes & repeats	Aorta	Aorta
4	chr13:96323000-96324600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr13:96323000-96328400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:96323200-96323800	ZNF genes & repeats	NHEK	skin
7	chr13:96323200-96324200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:96323200-96324400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:96323200-96328200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:96323400-96324400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr13:96323400-96326000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:96323400-96326800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:96323400-96328000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:96323600-96324200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:96323600-96324200	Enhancers	Right Ventricle	heart
16	chr13:96323600-96324400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:96323600-96324400	ZNF genes & repeats	Pancreas	Pancrea
18	chr13:96323600-96327000	Weak transcription	Osteobl	bone
19	chr13:96323600-96327600	Weak transcription	Fetal Heart	heart

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