Variant report

Variant	rs72632667
Chromosome Location	chr13:96345715-96345716
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLDN10-4	chr13:96345374-96346226	NONHSAT034770

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12583253	0.84[ASN][1000 genomes]
rs12583374	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12585001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12585954	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17881101	0.84[ASN][1000 genomes]
rs17882362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289812	0.84[ASN][1000 genomes]
rs2289813	0.84[ASN][1000 genomes]
rs3759446	0.83[EUR][1000 genomes]
rs3848075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58498169	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60253451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72632666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556498	0.84[ASN][1000 genomes]
rs9561922	0.81[EUR][1000 genomes]
rs9561933	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561944	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561950	0.81[ASN][1000 genomes]
rs9561952	0.84[ASN][1000 genomes]
rs9561954	0.84[ASN][1000 genomes]
rs9561958	0.84[ASN][1000 genomes]
rs9669929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96331400-96350600	Weak transcription	Aorta	Aorta
2	chr13:96331400-96362200	Weak transcription	HSMM	muscle
3	chr13:96332000-96348000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:96332400-96360400	Weak transcription	NHDF-Ad	bronchial
5	chr13:96332600-96350200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:96337400-96346400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:96337400-96347600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr13:96337400-96350400	Weak transcription	Lung	lung
9	chr13:96337600-96346200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:96337600-96347200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:96337600-96347800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:96337600-96348400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:96337600-96350400	Weak transcription	Pancreas	Pancrea
14	chr13:96337600-96350400	Weak transcription	Right Ventricle	heart
15	chr13:96337600-96350400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr13:96337600-96350400	Weak transcription	Small Intestine	intestine
17	chr13:96337600-96356000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr13:96337600-96358800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr13:96337600-96360800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr13:96337600-96362200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr13:96337600-96364200	Weak transcription	Ovary	ovary
22	chr13:96341000-96350600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:96341200-96350400	Weak transcription	Psoas Muscle	Psoas
24	chr13:96341200-96350400	Weak transcription	Right Atrium	heart
25	chr13:96342000-96346600	Weak transcription	GM12878-XiMat	blood
26	chr13:96342000-96350400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr13:96342000-96350400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr13:96342000-96350600	Weak transcription	Liver	Liver
29	chr13:96342200-96349200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr13:96343400-96347000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr13:96344200-96348200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:96345000-96352600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr13:96345200-96362200	Weak transcription	Duodenum Mucosa	Duodenum

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