Variant report

Variant	rs72638196
Chromosome Location	chr11:35305859-35305860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35303423..35306027-chr11:35316239..35317817,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1042113	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444271	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10488816	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10488817	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488818	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836366	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836368	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033053	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033054	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033055	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033056	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033057	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033058	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033060	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033063	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11033064	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12146523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418812	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12576364	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576375	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16927292	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2236272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794087	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3794088	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3794093	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794094	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3794097	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3829266	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3891872	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3895234	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs41352148	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41525047	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756207	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56043665	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56140126	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56402269	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61880962	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61882290	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61882291	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61882292	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61882293	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111043	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111055	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111179	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638197	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs752949	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7927975	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7940391	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
2	chr11:35285800-35308800	Weak transcription	Gastric	stomach
3	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:35298800-35306000	Weak transcription	Brain Anterior Caudate	brain
6	chr11:35299000-35308800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:35299600-35309800	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:35300400-35309800	Strong transcription	Fetal Brain Female	brain
11	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:35302600-35309800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
14	chr11:35303000-35307000	Weak transcription	Brain Germinal Matrix	brain
15	chr11:35304000-35324800	Weak transcription	Liver	Liver
16	chr11:35304200-35309600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:35304200-35309800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:35304200-35310600	Weak transcription	Left Ventricle	heart
19	chr11:35304600-35306400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:35304600-35306600	Weak transcription	HSMMtube	muscle
21	chr11:35304600-35309600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:35304600-35309600	Weak transcription	HSMM	muscle
23	chr11:35304600-35309800	Weak transcription	Osteobl	bone
24	chr11:35304600-35310000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:35304600-35314200	Weak transcription	Stomach Mucosa	stomach
26	chr11:35304600-35317000	Weak transcription	Pancreas	Pancrea
27	chr11:35304600-35326600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:35304800-35309000	Weak transcription	NHDF-Ad	bronchial
29	chr11:35304800-35309800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:35304800-35309800	Weak transcription	NHLF	lung
31	chr11:35304800-35310000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:35304800-35310000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:35304800-35310200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:35305000-35306200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:35305200-35309800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:35305800-35307000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:35305800-35308000	Strong transcription	HepG2	liver

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