Variant report
| Variant | rs72645008 |
|---|---|
| Chromosome Location | chr14:38783378-38783379 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11620858 | 0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11628617 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1168436 | 0.81[ASN][1000 genomes] |
| rs1168453 | 0.81[ASN][1000 genomes] |
| rs1168457 | 0.81[ASN][1000 genomes] |
| rs1168458 | 0.81[ASN][1000 genomes] |
| rs1168459 | 0.81[ASN][1000 genomes] |
| rs1168468 | 0.81[ASN][1000 genomes] |
| rs1168478 | 0.80[ASN][1000 genomes] |
| rs1168488 | 0.81[ASN][1000 genomes] |
| rs1168491 | 0.81[ASN][1000 genomes] |
| rs1168492 | 0.81[ASN][1000 genomes] |
| rs1168493 | 0.81[ASN][1000 genomes] |
| rs1168494 | 0.81[ASN][1000 genomes] |
| rs1168496 | 0.81[ASN][1000 genomes] |
| rs1168499 | 0.81[ASN][1000 genomes] |
| rs1168504 | 0.81[ASN][1000 genomes] |
| rs1168509 | 0.81[ASN][1000 genomes] |
| rs1168510 | 0.81[ASN][1000 genomes] |
| rs1168516 | 0.81[ASN][1000 genomes] |
| rs1168518 | 0.81[ASN][1000 genomes] |
| rs1168519 | 0.81[ASN][1000 genomes] |
| rs1168520 | 0.81[ASN][1000 genomes] |
| rs1183884 | 0.81[ASN][1000 genomes] |
| rs1185623 | 0.81[ASN][1000 genomes] |
| rs13353118 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1763181 | 0.80[ASN][1000 genomes] |
| rs67210682 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9322987 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs990494 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916985 | chr14:38052347-38838551 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 59 gene(s) | inside rSNPs | diseases |
| 2 | nsv533235 | chr14:38558180-39117391 | Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv832773 | chr14:38612778-38785003 | Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv530640 | chr14:38702117-38927901 | Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:38782200-38784000 | Enhancers | Muscle Satellite Cultured Cells | -- |
| 2 | chr14:38783000-38783800 | Enhancers | Hela-S3 | cervix |
| 3 | chr14:38783000-38784000 | Enhancers | HUVEC | blood vessel |
