Variant report
| Variant | rs72655003 |
|---|---|
| Chromosome Location | chr8:63768896-63768897 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11988327 | 1.00[ASN][1000 genomes] |
| rs11995803 | 1.00[ASN][1000 genomes] |
| rs72655011 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655020 | 1.00[ASN][1000 genomes] |
| rs72655031 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655032 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655033 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655040 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655052 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655076 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72656520 | 1.00[ASN][1000 genomes] |
| rs72656523 | 1.00[ASN][1000 genomes] |
| rs72656530 | 1.00[ASN][1000 genomes] |
| rs72656539 | 1.00[ASN][1000 genomes] |
| rs72656545 | 1.00[ASN][1000 genomes] |
| rs72656600 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72658335 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72658345 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72658355 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72658358 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72658363 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72658377 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831341 | chr8:63658694-63852213 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv890961 | chr8:63708519-63773787 | Weak transcription Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv890962 | chr8:63708519-63812686 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv967599 | chr8:63768089-63769258 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63759000-63776400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr8:63768800-63769600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
