Variant report

Variant	rs72655011
Chromosome Location	chr8:63780331-63780332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr8:63779961-63780379	GM12878	blood:	n/a	chr8:63780143-63780160
2	RUNX3	chr8:63779924-63780353	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000253431	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11988327	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995803	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655003	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655020	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655031	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655032	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655033	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655040	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655052	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655076	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72656520	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72656523	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72656530	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72656539	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72656545	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72656600	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658335	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658345	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658355	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658358	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658363	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658377	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658378	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63777600-63781200	Weak transcription	Fetal Brain Female	brain
2	chr8:63779800-63782000	Enhancers	Cortex derived primary cultured neurospheres	brain

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