Variant report

Variant	rs72656294
Chromosome Location	chr4:86684641-86684642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11097072	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097073	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097074	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12054628	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13112493	0.82[EUR][1000 genomes]
rs13123125	0.99[ASN][1000 genomes]
rs1482092	0.83[AMR][1000 genomes]
rs17010839	0.99[ASN][1000 genomes]
rs343848	0.81[EUR][1000 genomes]
rs343852	0.81[EUR][1000 genomes]
rs41477846	0.82[AMR][1000 genomes]
rs56989679	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6819529	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6831420	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6855390	0.82[AMR][1000 genomes]
rs72656252	0.81[AMR][1000 genomes]
rs72656285	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7674888	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7680588	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86674800-86685400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:86676800-86697800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:86678200-86685200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:86680400-86685600	Enhancers	Osteobl	bone
6	chr4:86681000-86684800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:86681600-86684800	Enhancers	Fetal Stomach	stomach
8	chr4:86681800-86684800	Enhancers	Fetal Muscle Leg	muscle
9	chr4:86682000-86685200	Enhancers	NHDF-Ad	bronchial
10	chr4:86682000-86697000	Weak transcription	Psoas Muscle	Psoas
11	chr4:86682800-86684800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:86682800-86684800	Enhancers	Right Atrium	heart
13	chr4:86683000-86685000	Enhancers	Fetal Lung	lung
14	chr4:86683200-86684800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr4:86683200-86699000	Weak transcription	Primary B cells from cord blood	blood
16	chr4:86683400-86684800	Enhancers	HSMM	muscle
17	chr4:86683800-86686600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:86683800-86695200	Weak transcription	HMEC	breast
19	chr4:86684000-86685600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:86684000-86685600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:86684000-86685600	Enhancers	NHLF	lung
22	chr4:86684000-86688600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:86684200-86684800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:86684200-86684800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:86684200-86685600	Weak transcription	Brain Anterior Caudate	brain
26	chr4:86684200-86685800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:86684400-86684800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:86684400-86684800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr4:86684400-86684800	Enhancers	Gastric	stomach
30	chr4:86684400-86684800	Enhancers	Ovary	ovary
31	chr4:86684400-86684800	Enhancers	Small Intestine	intestine
32	chr4:86684400-86685200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:86684400-86685800	Weak transcription	Fetal Kidney	kidney
34	chr4:86684400-86687600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:86684600-86684800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:86684600-86684800	Enhancers	Pancreas	Pancrea
37	chr4:86684600-86684800	Enhancers	Rectal Smooth Muscle	rectum
38	chr4:86684600-86686400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr4:86684600-86687200	Enhancers	HUVEC	blood vessel
40	chr4:86684600-86687600	Weak transcription	Adipose Nuclei	Adipose
41	chr4:86684600-86695800	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links