Variant report
| Variant | rs72656539 |
|---|---|
| Chromosome Location | chr8:63870434-63870435 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11988327 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11995803 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655003 | 1.00[ASN][1000 genomes] |
| rs72655011 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655020 | 1.00[ASN][1000 genomes] |
| rs72655031 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655032 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655033 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655040 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655052 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72655076 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72656520 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72656523 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72656530 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72656545 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72656600 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72658335 | 1.00[ASN][1000 genomes] |
| rs72658345 | 1.00[ASN][1000 genomes] |
| rs72658355 | 1.00[ASN][1000 genomes] |
| rs72658358 | 1.00[ASN][1000 genomes] |
| rs72658363 | 1.00[ASN][1000 genomes] |
| rs72658377 | 1.00[ASN][1000 genomes] |
| rs72658378 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv890963 | chr8:63846472-63885100 | Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv890964 | chr8:63848556-63898146 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv611447 | chr8:63867493-63883593 | Weak transcription Strong transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63859600-63877800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr8:63868600-63895800 | Weak transcription | Fetal Brain Female | brain |
